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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15365 and LRK54_RS15370 overlap by 2 nucleotides
LRK54_RS15370 and LRK54_RS15375 are separated by 19 nucleotides
LRK54_RS15375 and LRK54_RS15380 are separated by 294 nucleotides
LRK54_RS15380 and LRK54_RS15385 are separated by 302 nucleotides
LRK54_RS15365: LRK54_RS15365 - hypothetical protein, at 3,391,386 to 3,391,544
_RS15365
LRK54_RS15370: LRK54_RS15370 - transposase, at 3,391,543 to 3,391,986
_RS15370
LRK54_RS15375: LRK54_RS15375 - TonB-dependent receptor, at 3,392,006 to 3,394,381
_RS15375
LRK54_RS15380: LRK54_RS15380 - transposase, at 3,394,676 to 3,395,408
_RS15380
LRK54_RS15385: LRK54_RS15385 - phosphosulfolactate synthase, at 3,395,711 to 3,396,544
_RS15385
Group
Condition
LRK54
_RS15365
LRK54
_RS15370
LRK54
_RS15375
LRK54
_RS15380
LRK54
_RS15385
r2a_control
R2A control
-1.3
-0.6
-0.2
-0.3
-0.2
no stress control
no stress control
-1.5
-0.4
-0.0
-0.1
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-2.5
+0.1
+0.0
+0.2
+0.3
carbon source
a-Cyclodextrin 20 mM
-1.9
+0.0
-0.1
-0.1
+0.1
stress
R2A with nitrite 25 mM
-1.0
-0.3
-0.1
-0.1
-0.4
stress
R2A with Barium chloride 1.25 mM
-1.1
-0.2
-0.1
-0.3
-0.1
stress
R2A with Calcium chloride 125 mM
-0.7
-0.3
-0.1
-0.2
-0.4
r2a_control
R2A control
-1.4
+0.0
-0.0
-0.1
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-2.0
+0.1
+0.1
-0.2
+0.1
stress
R2A with lead(II) chloride 0.625 mM
-1.0
-0.2
-0.1
-0.3
-0.3
carbon source
a-Cyclodextrin 20 mM
-1.6
-0.3
+0.2
+0.1
-0.1
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-1.4
-0.2
+0.0
-0.2
+0.1
stress
R2A with Barium chloride 1.25 mM
-1.2
+0.2
-0.2
-0.2
-0.1
phage
S3-T2
-1.6
+0.2
+0.1
+0.0
-0.2
stress
R2A with chromate 0.0048828125 mM
-1.2
+0.3
+0.1
-0.5
-0.2
stress
R2A with selenate 31.25 mM
-1.1
+0.2
+0.1
-0.2
-0.3
phage
2A-T1
-1.3
-0.1
+0.1
+0.2
-0.2
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-1.3
+0.4
+0.0
+0.3
-0.0
phage
4B-T2
-1.3
+0.6
-0.2
+0.1
+0.2
stress
R2A with Cobalt chloride 0.15625 mM
-1.0
+0.5
+0.1
+0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+0.7
-0.1
-0.3
-0.1
-0.6
stress
R2A with Cobalt chloride 0.15625 mM
-1.3
+0.5
+0.0
+0.1
+0.3
pH
R2A pH5
+0.8
-0.2
-0.1
-0.3
-0.4
carbon source
D-Glucose (C); 20C
+1.1
+0.1
+0.0
-0.1
-0.4
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+1.2
+0.2
+0.1
-0.2
-0.1
phage
4B-T1
+1.2
+0.2
+0.1
-0.0
-0.2
phage
1D-T2
+0.9
+0.4
+0.3
+0.0
-0.2
phage
3E-T2
+1.1
+0.2
-0.1
+0.2
+0.2
phage
2B-T1
+1.1
+0.4
+0.0
+0.2
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+2.0
-0.3
-0.3
+0.2
+0.5
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