Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS15180 and LRK54_RS15185 are separated by 109 nucleotidesLRK54_RS15185 and LRK54_RS15190 are separated by 18 nucleotidesLRK54_RS15190 and LRK54_RS15195 are separated by 189 nucleotidesLRK54_RS15195 and LRK54_RS15200 overlap by 4 nucleotides LRK54_RS15180: LRK54_RS15180 - sulfurtransferase, at 3,351,001 to 3,351,849 _RS15180 LRK54_RS15185: LRK54_RS15185 - enoyl-CoA hydratase/isomerase family protein, at 3,351,959 to 3,352,717 _RS15185 LRK54_RS15190: LRK54_RS15190 - DUF4139 domain-containing protein, at 3,352,736 to 3,354,190 _RS15190 LRK54_RS15195: LRK54_RS15195 - GNAT family N-acetyltransferase, at 3,354,380 to 3,354,880 _RS15195 LRK54_RS15200: LRK54_RS15200 - AraC family transcriptional regulator, at 3,354,877 to 3,355,515 _RS15200
Group Condition LRK54_RS15180 LRK54_RS15185 LRK54_RS15190 LRK54_RS15195 LRK54_RS15200
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 -0.1 +0.2 -0.1 -2.1
stress R2A with Other_metal_mix 1 X +0.1 -0.1 +0.2 +0.1 -2.0
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.0 +0.1 -0.3 +0.1 -1.6
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.1 -0.2 -0.2 -0.2 -0.9
phage 2A-T1 -0.2 -0.4 -0.1 -0.1 -0.8
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 +0.1 -0.0 -0.2 -1.4
stress R2A with Selective_ion_mix_1 1 X -0.1 -0.1 -0.1 +0.0 -1.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.1 +0.1 -0.2 -0.0 -1.2
stress R2A with Selective_ion_mix_1 1 X -0.1 -0.3 +0.1 +0.0 -1.0
carbon source D-Glucose (C); 20C +0.0 +0.0 +0.0 -0.0 -1.3
phage 1B-T1 -0.1 +0.1 -0.0 +0.1 -1.3
stress R2A with nitrite 50 mM +0.1 -0.3 +0.0 +0.0 -1.2
phage 3B-T1 -0.1 -0.3 +0.1 -0.1 -0.8
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.1 -0.3 -0.1 +0.0 -0.9
stress R2A with Ferric chloride 1.5625 mM +0.1 +0.2 -0.1 -0.0 -1.4
stress R2A with bismuth(III) chloride 0.03125 mM -0.0 +0.1 -0.3 +0.2 -1.0
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.2 -0.2 +0.0 -0.0 -1.0
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.1 -0.5 +0.1 -0.0 -0.7
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.1 -0.2 +0.1 +0.2 -0.9
stress R2A with nitrate 250 mM +0.1 -0.2 +0.1 +0.0 -0.9
phage 1E-T1 +0.0 -0.1 +0.3 +0.2 -1.0
stress R2A with m-arsenite 0.078125 mM +0.2 -0.2 +0.2 +0.1 -0.8
pH R2A pH5 -0.0 -0.5 +0.0 -0.0 +0.8
phage 4B-T1 -0.0 -0.5 +0.4 +0.2 +0.3
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.1 -0.2 -0.1 -0.3 +1.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 -0.2 -0.1 -0.0 +1.1
pH R2A_PIPES pH 4.25 +0.0 -0.2 +0.1 -0.1 +1.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.0 +0.3 +0.1 -0.1 +0.8
phage 2E-T1 -0.1 +0.2 +0.1 +0.2 +0.9
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.2 +0.3 +0.1 +0.1 +0.6
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