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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15180 and LRK54_RS15185 are separated by 109 nucleotides
LRK54_RS15185 and LRK54_RS15190 are separated by 18 nucleotides
LRK54_RS15190 and LRK54_RS15195 are separated by 189 nucleotides
LRK54_RS15195 and LRK54_RS15200 overlap by 4 nucleotides
LRK54_RS15180: LRK54_RS15180 - sulfurtransferase, at 3,351,001 to 3,351,849
_RS15180
LRK54_RS15185: LRK54_RS15185 - enoyl-CoA hydratase/isomerase family protein, at 3,351,959 to 3,352,717
_RS15185
LRK54_RS15190: LRK54_RS15190 - DUF4139 domain-containing protein, at 3,352,736 to 3,354,190
_RS15190
LRK54_RS15195: LRK54_RS15195 - GNAT family N-acetyltransferase, at 3,354,380 to 3,354,880
_RS15195
LRK54_RS15200: LRK54_RS15200 - AraC family transcriptional regulator, at 3,354,877 to 3,355,515
_RS15200
Group
Condition
LRK54
_RS15180
LRK54
_RS15185
LRK54
_RS15190
LRK54
_RS15195
LRK54
_RS15200
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.0
-0.1
+0.2
-0.1
-2.1
stress
R2A with Other_metal_mix 1 X
+0.1
-0.1
+0.2
+0.1
-2.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.0
+0.1
-0.3
+0.1
-1.6
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.1
-0.2
-0.2
-0.2
-0.9
phage
2A-T1
-0.2
-0.4
-0.1
-0.1
-0.8
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.0
+0.1
-0.0
-0.2
-1.4
stress
R2A with Selective_ion_mix_1 1 X
-0.1
-0.1
-0.1
+0.0
-1.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.1
+0.1
-0.2
-0.0
-1.2
stress
R2A with Selective_ion_mix_1 1 X
-0.1
-0.3
+0.1
+0.0
-1.0
carbon source
D-Glucose (C); 20C
+0.0
+0.0
+0.0
-0.0
-1.3
phage
1B-T1
-0.1
+0.1
-0.0
+0.1
-1.3
stress
R2A with nitrite 50 mM
+0.1
-0.3
+0.0
+0.0
-1.2
phage
3B-T1
-0.1
-0.3
+0.1
-0.1
-0.8
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
+0.1
-0.3
-0.1
+0.0
-0.9
stress
R2A with Ferric chloride 1.5625 mM
+0.1
+0.2
-0.1
-0.0
-1.4
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.0
+0.1
-0.3
+0.2
-1.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.2
+0.0
-0.0
-1.0
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.1
-0.5
+0.1
-0.0
-0.7
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.1
-0.2
+0.1
+0.2
-0.9
stress
R2A with nitrate 250 mM
+0.1
-0.2
+0.1
+0.0
-0.9
phage
1E-T1
+0.0
-0.1
+0.3
+0.2
-1.0
stress
R2A with m-arsenite 0.078125 mM
+0.2
-0.2
+0.2
+0.1
-0.8
pH
R2A pH5
-0.0
-0.5
+0.0
-0.0
+0.8
phage
4B-T1
-0.0
-0.5
+0.4
+0.2
+0.3
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.1
-0.2
-0.1
-0.3
+1.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.2
-0.2
-0.1
-0.0
+1.1
pH
R2A_PIPES pH 4.25
+0.0
-0.2
+0.1
-0.1
+1.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.0
+0.3
+0.1
-0.1
+0.8
phage
2E-T1
-0.1
+0.2
+0.1
+0.2
+0.9
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.2
+0.3
+0.1
+0.1
+0.6
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