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Cofit
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS15165 and LRK54_RS15170 are separated by 166 nucleotides
LRK54_RS15170 and LRK54_RS15175 are separated by 38 nucleotides
LRK54_RS15175 and LRK54_RS15180 overlap by 4 nucleotides
LRK54_RS15180 and LRK54_RS15185 are separated by 109 nucleotides
LRK54_RS15165: LRK54_RS15165 - enoyl-CoA hydratase-related protein, at 3,348,513 to 3,349,295
_RS15165
LRK54_RS15170: LRK54_RS15170 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,349,462 to 3,350,184
_RS15170
LRK54_RS15175: LRK54_RS15175 - DUF1289 domain-containing protein, at 3,350,223 to 3,351,004
_RS15175
LRK54_RS15180: LRK54_RS15180 - sulfurtransferase, at 3,351,001 to 3,351,849
_RS15180
LRK54_RS15185: LRK54_RS15185 - enoyl-CoA hydratase/isomerase family protein, at 3,351,959 to 3,352,717
_RS15185
Group
Condition
LRK54
_RS15165
LRK54
_RS15170
LRK54
_RS15175
LRK54
_RS15180
LRK54
_RS15185
pH
R2A_PIPES pH 4
-0.7
-3.2
-0.3
+0.0
+0.0
pH
R2A_PIPES pH 4
-0.8
-2.7
-0.1
-0.1
-0.0
stress
R2A with SpecU metal mix 1 X
-0.8
-2.5
-0.1
+0.2
+0.2
stress
R2A with SpecU metal mix 1 X
-0.7
-2.4
-0.1
+0.1
+0.2
carbon source
L-Glutamic 20 mM
-0.7
-2.0
-0.1
-0.1
+0.2
stress
R2A with sodium bromide 250 mM
-2.2
-0.7
-0.0
+0.0
+0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.9
-2.3
+0.1
+0.2
+0.3
stress
R2A with Uranyl acetate 2.5 mM
-2.6
+0.5
-0.4
-0.0
-0.0
stress
R2A with Magnesium sulfate 3.90625 mM
-2.4
+0.5
-0.1
-0.0
+0.2
r2a_control
R2A control
-2.4
+0.7
-0.1
+0.0
+0.1
stress
R2A with Aluminum chloride 3.125 mM
+0.6
-2.4
+0.2
+0.1
-0.0
r2a_control
R2A control
-2.4
+1.1
-0.2
-0.0
+0.0
stress
R2A with Zinc chloride 0.625 mM
-1.8
+0.8
-0.4
+0.0
-0.1
stress
R2A with bismuth(III) chloride 0.03125 mM
-2.2
+1.4
-0.6
-0.0
+0.1
carbon source
a-Cyclodextrin 20 mM
-0.7
-1.5
+1.1
-0.0
-0.0
r2a_control
R2A control
-2.1
+1.2
-0.1
+0.1
-0.1
r2a_control
R2A control
-1.8
+0.9
-0.4
+0.0
+0.2
r2a_control
R2A control
-1.9
+1.1
-0.1
+0.1
-0.0
r2a_control
R2A control
-1.6
+1.1
-0.2
-0.1
-0.2
stress
R2A with lithium chloride 15.625 mM
-2.3
+1.4
+0.1
+0.0
-0.0
r2a_control
R2A control
-1.8
+1.1
-0.1
+0.0
-0.2
r2a_control
R2A control
-2.0
+1.1
-0.1
-0.0
+0.1
r2a_control
R2A control
-1.5
+1.1
-0.3
+0.0
-0.1
r2a_control
R2A control
-1.8
+1.2
-0.1
+0.0
+0.0
carbon source
a-Cyclodextrin 20 mM
-0.1
-1.4
+1.4
-0.2
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-2.0
+1.4
+0.1
+0.0
+0.3
stress
R2A with silver chloride 1 mM
-1.4
+2.1
-0.4
+0.1
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.3
+0.9
+0.9
+0.0
+0.1
stress
R2A with silver chloride 1 mM
-1.3
+2.2
+0.1
+0.1
-0.0
stress
R2A with Manganese (II) chloride tetrahydrate 2.5 mM
-0.6
+2.5
+0.4
+0.0
-0.1
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