Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS15110 and LRK54_RS15115 are separated by 55 nucleotidesLRK54_RS15115 and LRK54_RS15120 are separated by 17 nucleotidesLRK54_RS15120 and LRK54_RS15125 are separated by 100 nucleotidesLRK54_RS15125 and LRK54_RS15130 are separated by 4 nucleotides LRK54_RS15110: LRK54_RS15110 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 3,337,469 to 3,337,948 _RS15110 LRK54_RS15115: LRK54_RS15115 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,338,004 to 3,338,834 _RS15115 LRK54_RS15120: LRK54_RS15120 - pantoate--beta-alanine ligase, at 3,338,852 to 3,339,697 _RS15120 LRK54_RS15125: LRK54_RS15125 - aspartate 1-decarboxylase, at 3,339,798 to 3,340,190 _RS15125 LRK54_RS15130: LRK54_RS15130 - tRNA epoxyqueuosine(34) reductase QueG, at 3,340,195 to 3,341,292 _RS15130
Group Condition LRK54_RS15110 LRK54_RS15115 LRK54_RS15120 LRK54_RS15125 LRK54_RS15130
phage 2F-T2 N.D. N.D. N.D. N.D. -0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 N.D. N.D. N.D. N.D. -0.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. N.D. N.D. N.D. -0.3
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. N.D. N.D. N.D. -0.2
phage 2A-T1 N.D. N.D. N.D. N.D. -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. N.D. N.D. N.D. -0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. N.D. N.D. N.D. -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. N.D. N.D. N.D. -0.2
biofilm assay; planktonic sample planktonic; Day1; NLDM; N.D. N.D. N.D. N.D. -0.2
phage 1D-T2 N.D. N.D. N.D. N.D. -0.2
phage 2E-T1 N.D. N.D. N.D. N.D. -0.2
phage 2B-T1 N.D. N.D. N.D. N.D. -0.2
stress R2A with Uranyl acetate 2.5 mM N.D. N.D. N.D. N.D. -0.2
phage S5-T2 N.D. N.D. N.D. N.D. -0.2
pH R2A_PIPES pH 4 N.D. N.D. N.D. N.D. -0.2
phage S3-T1 N.D. N.D. N.D. N.D. -0.2
phage 2B-T2 N.D. N.D. N.D. N.D. -0.2
no phage control No phage control N.D. N.D. N.D. N.D. -0.2
phage phage 31.1 N.D. N.D. N.D. N.D. +0.1
stress R2A with chromate 0.0048828125 mM N.D. N.D. N.D. N.D. +0.2
carbon source D-Raffinose 20 mM N.D. N.D. N.D. N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. N.D. N.D. N.D. +0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM N.D. N.D. N.D. N.D. +0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 N.D. N.D. N.D. N.D. +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM N.D. N.D. N.D. N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. N.D. N.D. N.D. +0.2
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM N.D. N.D. N.D. N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. N.D. N.D. N.D. +0.3
stress R2A with Nickel (II) chloride 0.3125 mM N.D. N.D. N.D. N.D. +0.3
phage 4E-T1 N.D. N.D. N.D. N.D. +0.3
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