Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS15035 and LRK54_RS15040 are separated by 112 nucleotidesLRK54_RS15040 and LRK54_RS15045 overlap by 4 nucleotidesLRK54_RS15045 and LRK54_RS15050 are separated by 173 nucleotidesLRK54_RS15050 and LRK54_RS15055 are separated by 84 nucleotides LRK54_RS15035: LRK54_RS15035 - M48 family metalloprotease, at 3,324,724 to 3,326,346 _RS15035 LRK54_RS15040: LRK54_RS15040 - glutaredoxin 3, at 3,326,459 to 3,326,722 _RS15040 LRK54_RS15045: LRK54_RS15045 - carboxymuconolactone decarboxylase family protein, at 3,326,719 to 3,327,105 _RS15045 LRK54_RS15050: LRK54_RS15050 - isocitrate dehydrogenase, at 3,327,279 to 3,328,292 _RS15050 LRK54_RS15055: LRK54_RS15055 - carboxymuconolactone decarboxylase family protein, at 3,328,377 to 3,328,832 _RS15055
Group Condition LRK54_RS15035 LRK54_RS15040 LRK54_RS15045 LRK54_RS15050 LRK54_RS15055
stress R2A with arsenate 15.625 mM -2.0 -2.7 +0.0 N.D. +0.1
stress R2A with Nickel (II) chloride 0.3125 mM -2.2 -2.1 +0.1 N.D. -0.2
stress R2A with arsenate 15.625 mM -2.1 -2.6 +0.3 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -2.8 -1.3 +0.1 N.D. -0.0
biofilm assay; planktonic sample planktonic; Day1; NLDM; -2.7 -0.8 -0.2 N.D. -0.3
stress R2A with m-arsenite 0.078125 mM -2.2 -1.8 +0.3 N.D. +0.1
stress R2A with Zinc chloride 0.625 mM -2.2 -1.5 +0.0 N.D. +0.1
pH R2A_PIPES pH 4 -2.5 -1.1 +0.0 N.D. +0.1
stress R2A with arsenate 31.25 mM -2.3 -1.4 -0.0 N.D. +0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -2.0 -1.3 -0.0 N.D. -0.2
stress R2A with arsenate 31.25 mM -2.6 -1.2 +0.1 N.D. +0.2
carbon source L-Glutamic 20 mM -2.6 -0.6 -0.1 N.D. -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; -2.5 -0.8 -0.1 N.D. -0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -2.8 -0.6 +0.1 N.D. -0.1
stress R2A with Chloride 250 mM -2.8 -0.8 +0.0 N.D. +0.2
stress R2A with m-arsenite 0.078125 mM -2.1 -1.6 +0.2 N.D. +0.3
stress R2A with Calcium chloride 125 mM -2.6 -0.7 +0.1 N.D. -0.1
stress R2A with Aluminum chloride 3.125 mM -2.4 -1.2 +0.2 N.D. +0.2
stress R2A with Chloride 250 mM -2.6 -0.9 +0.1 N.D. +0.2
carbon source NAG 20 mM -2.6 -0.7 +0.1 N.D. +0.0
r2a_control R2A control -2.5 -1.0 +0.1 N.D. +0.2
stress R2A_PIPES with Cobalt chloride 256 uM -2.5 -0.8 +0.1 N.D. +0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; -2.8 -0.4 +0.1 N.D. +0.3
stress R2A with selenate 31.25 mM -2.6 -0.5 +0.2 N.D. +0.1
stress R2A with Zinc chloride 0.625 mM -2.3 -0.8 +0.1 N.D. +0.2
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM -2.3 -0.8 +0.2 N.D. +0.2
stress R2A with Chloride 250 mM -2.5 -0.6 +0.3 N.D. +0.2
stress R2A with bismuth(III) chloride 0.03125 mM -1.6 -1.5 +0.4 N.D. +0.2
stress R2A with Uranyl acetate 2.5 mM -2.7 +0.5 -0.2 N.D. +0.1
carbon source Gly-Glu 20 mM -2.5 +0.8 -0.2 N.D. -0.1
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