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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14965 and LRK54_RS14970 are separated by 207 nucleotides
LRK54_RS14970 and LRK54_RS14975 are separated by 723 nucleotides
LRK54_RS14975 and LRK54_RS14980 are separated by 137 nucleotides
LRK54_RS14980 and LRK54_RS14985 are separated by 32 nucleotides
LRK54_RS14965: LRK54_RS14965 - hypothetical protein, at 3,309,345 to 3,309,731
_RS14965
LRK54_RS14970: LRK54_RS14970 - hypothetical protein, at 3,309,939 to 3,310,421
_RS14970
LRK54_RS14975: LRK54_RS14975 - CinA family protein, at 3,311,145 to 3,311,654
_RS14975
LRK54_RS14980: LRK54_RS14980 - recombinase RecA, at 3,311,792 to 3,312,829
_RS14980
LRK54_RS14985: LRK54_RS14985 - recombination regulator RecX, at 3,312,862 to 3,313,398
_RS14985
Group
Condition
LRK54
_RS14965
LRK54
_RS14970
LRK54
_RS14975
LRK54
_RS14980
LRK54
_RS14985
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.1
-0.3
+0.0
-0.3
-2.7
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.8
-0.7
-0.1
-1.7
+0.0
stress
R2A with Magnesium sulfate 3.90625 mM
-0.5
-0.8
+0.1
-1.3
-0.1
stress
R2A with m-arsenite 0.078125 mM
-0.7
-0.4
+0.2
-0.8
-0.9
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.8
-0.5
-0.2
-1.2
+0.2
stress
R2A with arsenate 15.625 mM
-0.4
-0.6
-0.3
-0.6
-0.3
stress
R2A with selenate 31.25 mM
-0.2
-0.2
+0.1
-1.7
-0.2
stress
R2A with silver chloride 1 mM
-0.7
-0.6
+0.3
-1.3
+0.2
stress
R2A with Strontium chloride 3.90625 mM
-0.1
-0.5
+0.1
-1.4
-0.3
r2a_control
R2A control
-0.5
-0.3
-0.0
-1.0
-0.3
phage
S5-T2
-0.2
-0.7
-0.2
-0.8
-0.3
stress
R2A with nitrite 50 mM
-0.7
-0.5
-0.0
-1.0
+0.1
stress
R2A with Uranyl acetate 2.5 mM
-0.3
-0.6
+0.0
-1.0
-0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.3
+0.1
-0.2
-1.7
+0.0
r2a_control
R2A control
-0.3
-0.3
+0.1
-1.1
-0.4
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.0
-0.1
-0.8
-1.1
+0.1
r2a_control
R2A control
-0.5
-0.3
+0.1
-1.1
-0.1
stress
R2A with lithium chloride 15.625 mM
-0.0
-0.8
+0.2
-1.2
-0.1
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.8
-0.8
+0.1
-0.3
-0.0
stress
R2A with Calcium chloride 125 mM
-0.4
-0.2
+0.2
-0.9
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.2
-0.1
-0.6
-0.9
stress
R2A with sulfate 250 mM
-0.6
-0.5
+0.1
-1.0
+0.2
stress
R2A with Chloride 250 mM
-0.3
-0.7
+0.1
-1.0
+0.1
stress
R2A with Barium chloride 1.25 mM
-0.6
-0.6
+0.1
-0.8
+0.1
r2a_control
R2A control
-0.2
-0.5
+0.2
-1.2
+0.1
stress
R2A with Uranyl acetate 2.5 mM
-0.5
-0.5
+0.2
-1.0
+0.1
stress
R2A with nitrite 25 mM
-0.5
-0.1
+0.2
-0.9
-0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.4
-0.6
-1.0
+0.7
carbon source
acetate 20 mM
+0.4
-0.3
+0.5
-1.6
+0.8
carbon source
a-Cyclodextrin 20 mM
+0.5
+0.1
+0.5
-1.3
+0.1
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