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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14785 and LRK54_RS14790 are separated by 18 nucleotides
LRK54_RS14790 and LRK54_RS14795 are separated by 151 nucleotides
LRK54_RS14795 and LRK54_RS14800 are separated by 57 nucleotides
LRK54_RS14800 and LRK54_RS14805 are separated by 123 nucleotides
LRK54_RS14785: LRK54_RS14785 - NADH:flavin oxidoreductase/NADH oxidase, at 3,270,484 to 3,271,545
_RS14785
LRK54_RS14790: LRK54_RS14790 - pirin family protein, at 3,271,564 to 3,272,439
_RS14790
LRK54_RS14795: LRK54_RS14795 - DUF962 domain-containing protein, at 3,272,591 to 3,272,893
_RS14795
LRK54_RS14800: LRK54_RS14800 - cytochrome c, at 3,272,951 to 3,273,340
_RS14800
LRK54_RS14805: LRK54_RS14805 - tRNA threonylcarbamoyladenosine dehydratase, at 3,273,464 to 3,274,252
_RS14805
Group
Condition
LRK54
_RS14785
LRK54
_RS14790
LRK54
_RS14795
LRK54
_RS14800
LRK54
_RS14805
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.8
-0.1
+0.2
-3.5
-0.1
stress
R2A with chromate 0.0048828125 mM
-0.4
-1.0
-0.1
-1.9
-0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.5
+0.1
-0.4
-3.5
+0.1
stress
R2A with chromate 0.0048828125 mM
+0.0
-0.4
-0.4
-1.8
-0.5
phage
1C-T2
-0.9
-0.1
+0.0
-1.6
-0.2
phage
2A-T2
-0.9
-0.7
+0.1
-0.7
-0.2
phage
phage 31.1
+0.0
+0.4
-0.0
-3.1
+0.4
stress
R2A with copper (II) chloride 0.3125 mM
-0.1
-0.3
-0.0
-2.0
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.2
-0.0
-0.2
-0.9
-1.2
stress
R2A with nitrite 25 mM
-0.3
+0.0
-0.0
-1.8
+0.2
stress
R2A with Zinc chloride 0.625 mM
-0.6
-0.0
-0.1
-1.5
+0.4
stress
R2A with Aluminum chloride 3.125 mM
-0.1
-0.0
-0.1
-1.9
+0.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.2
-0.5
+0.2
-1.5
+0.1
phage
3E-T2
+0.2
+0.0
-0.2
-1.7
-0.0
stress
R2A with Other_metal_mix 1 X
-0.5
+0.2
-0.0
-1.5
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.5
-0.4
-0.1
-1.7
-0.1
stress
R2A with nitrate 250 mM
-0.1
-0.2
-0.1
-1.5
+0.3
stress
R2A with nitrite 50 mM
+0.1
+0.1
-0.1
-2.0
+0.4
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-1.1
-0.2
+0.4
+0.1
-0.6
phage
1E-T2
+0.8
-0.0
+0.1
-1.7
-0.1
no stress control
no stress control
-1.2
-0.1
+0.1
+0.7
+0.3
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.2
-0.4
-0.2
-0.3
+1.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-1.1
+0.2
-0.0
+1.0
+0.0
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.9
-0.4
+0.1
+1.0
+0.3
phage
2E-T2
+0.3
-0.6
-0.3
+1.3
-0.0
stress
R2A with Selective_ion_mix_1 1 X
+0.7
-0.3
-0.2
+0.9
-0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM;
-0.7
-0.0
+0.1
+1.2
+0.3
stress
R2A with Magnesium sulfate 3.90625 mM
-0.6
-0.1
-0.0
+1.0
+0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.5
-0.5
+0.4
+1.6
+0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.6
+0.1
+0.1
+1.4
+0.1
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