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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14725 and LRK54_RS14730 are separated by 228 nucleotides
LRK54_RS14730 and LRK54_RS14735 overlap by 4 nucleotides
LRK54_RS14735 and LRK54_RS14740 are separated by 99 nucleotides
LRK54_RS14740 and LRK54_RS14745 are separated by 149 nucleotides
LRK54_RS14725: LRK54_RS14725 - MetQ/NlpA family ABC transporter substrate-binding protein, at 3,260,908 to 3,261,702
_RS14725
LRK54_RS14730: LRK54_RS14730 - ABC transporter permease, at 3,261,931 to 3,262,608
_RS14730
LRK54_RS14735: LRK54_RS14735 - methionine ABC transporter ATP-binding protein, at 3,262,605 to 3,263,615
_RS14735
LRK54_RS14740: LRK54_RS14740 - glutathione peroxidase, at 3,263,715 to 3,264,200
_RS14740
LRK54_RS14745: LRK54_RS14745 - peptidylprolyl isomerase, at 3,264,350 to 3,264,832
_RS14745
Group
Condition
LRK54
_RS14725
LRK54
_RS14730
LRK54
_RS14735
LRK54
_RS14740
LRK54
_RS14745
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.5
-0.5
-1.0
-1.4
-0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-1.1
-1.1
-1.2
-0.1
+0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.3
-0.9
-1.0
-0.2
-0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
-0.7
-1.1
-0.7
-0.0
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
-0.7
-0.6
-0.8
-0.1
-0.0
stress
R2A with Chloride 250 mM
-0.4
-0.4
-0.7
-0.8
-0.0
stress
R2A with m-arsenite 0.0390625 mM
-0.5
-0.6
-0.5
-0.3
-0.2
stress
R2A with m-arsenite 0.0390625 mM
-0.6
-0.4
-0.4
-0.3
-0.3
pH
R2A pH7
-0.6
-0.5
-0.5
-0.3
-0.2
stress
R2A with sodium bromide 250 mM
-0.2
-0.7
-0.4
-0.6
-0.1
stress
R2A with Uranyl acetate 2.5 mM
-0.3
-0.2
-0.6
-0.3
-0.5
stress
R2A with nitrite 50 mM
-0.4
-0.4
-0.4
-0.4
-0.3
pH
R2A pH5
-0.4
-0.5
-0.5
-0.2
-0.2
stress
R2A with lithium chloride 15.625 mM
-0.4
-0.5
-0.4
-0.2
-0.3
pH
R2A_PIPES pH 4.25
-0.7
-0.7
+0.1
-0.4
-0.0
pH
R2A pH5
-0.6
-0.4
-0.4
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.15625 mM
-0.1
-0.7
-0.5
-0.3
-0.1
stress
R2A with nitrite 25 mM
-0.9
-0.1
-0.1
-0.5
-0.1
pH
R2A pH6
-0.3
-0.4
-0.3
-0.4
-0.3
stress
R2A with lithium chloride 15.625 mM
-0.4
-0.5
-0.3
-0.7
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.4
-0.1
-0.7
-0.5
+0.2
stress
R2A with silver chloride 1 mM
+0.3
-0.3
-0.7
-0.8
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.4
-0.5
-0.4
-0.3
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.1
-0.5
-0.5
-0.8
+0.7
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.7
+0.1
+0.1
-0.7
-0.2
phage
1D-T2
-0.3
-0.3
+0.6
-0.6
-0.1
no stress control
no stress control
-0.6
-0.2
-0.2
-0.2
+0.6
stress
R2A with Cobalt chloride 0.15625 mM
+0.9
+0.4
+0.3
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.8
+0.9
+0.8
-0.2
-0.2
stress
R2A with Cobalt chloride 0.15625 mM
+0.7
+0.6
+0.7
+0.2
+0.0
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