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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14475 and LRK54_RS14480 are separated by 108 nucleotides
LRK54_RS14480 and LRK54_RS14485 are separated by 225 nucleotides
LRK54_RS14485 and LRK54_RS14490 are separated by 163 nucleotides
LRK54_RS14490 and LRK54_RS14495 overlap by 4 nucleotides
LRK54_RS14475: LRK54_RS14475 - sensor histidine kinase, at 3,215,459 to 3,216,682
_RS14475
LRK54_RS14480: LRK54_RS14480 - response regulator transcription factor, at 3,216,791 to 3,217,432
_RS14480
LRK54_RS14485: LRK54_RS14485 - polyketide cyclase, at 3,217,658 to 3,219,025
_RS14485
LRK54_RS14490: LRK54_RS14490 - ABC transporter ATP-binding protein, at 3,219,189 to 3,220,133
_RS14490
LRK54_RS14495: LRK54_RS14495 - ABC transporter permease subunit, at 3,220,130 to 3,220,864
_RS14495
Group
Condition
LRK54
_RS14475
LRK54
_RS14480
LRK54
_RS14485
LRK54
_RS14490
LRK54
_RS14495
stress
R2A with Calcium chloride 250 mM
-0.8
-1.9
-2.8
-2.2
-2.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+1.1
+1.2
-1.7
-3.6
-4.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.9
+0.8
-1.0
-2.1
-3.2
stress
R2A with sodium bromide 250 mM
-0.7
-2.0
+1.0
-1.3
-1.2
stress
R2A with sodium bromide 250 mM
-0.5
-2.7
+0.9
-0.8
-0.9
carbon source
D-Glucose-6-Phosphate 20 mM
-0.7
-2.2
+2.8
-0.8
-0.1
stress
R2A with Aluminum chloride 1.5625 mM
+1.0
+1.2
-3.3
+0.3
-0.1
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-1.1
-1.8
+1.7
+0.4
+0.1
stress
R2A with Cobalt chloride 0.15625 mM
+1.4
+1.7
-1.5
+0.0
-1.2
stress
R2A with Cobalt chloride 0.15625 mM
+1.3
+2.0
-1.2
-0.3
-0.8
stress
R2A with Ferric chloride 1.5625 mM
-0.8
-1.6
+1.7
+1.5
+1.0
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.7
-1.3
+1.6
+1.6
+1.1
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.2
+0.1
-1.5
+1.9
+1.8
stress
R2A with Magnesium sulfate 3.90625 mM
-0.0
-1.3
+1.4
+1.7
+1.3
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+2.0
+3.5
-0.8
-0.7
-0.3
stress
R2A with Magnesium sulfate 3.90625 mM
+0.2
-1.0
+1.4
+1.9
+1.4
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.0
+0.1
-1.0
+2.4
+2.5
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+1.8
+3.1
-0.5
-0.1
-0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.4
-0.8
+1.8
+1.7
+1.0
stress
R2A with Cesium chloride 3.90625 mM
+0.0
-0.7
+2.0
+2.1
+1.7
stress
R2A with lithium chloride 15.625 mM
+0.1
-0.1
+2.4
+1.6
+1.5
stress
R2A with Cesium chloride 3.90625 mM
+0.3
-1.0
+2.2
+2.2
+1.9
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.9
-3.2
+1.9
+4.1
+3.8
stress
R2A with Manganese (II) chloride tetrahydrate 2.5 mM
+1.5
+2.2
-1.2
+1.6
+1.8
carbon source
a-Cyclodextrin 20 mM
-0.6
-2.3
+6.4
+1.4
+1.7
stress
R2A with lithium chloride 15.625 mM
-0.0
+0.5
+2.9
+1.9
+1.5
stress
R2A with m-arsenite 0.078125 mM
+0.5
+1.1
+3.0
+1.6
+1.4
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+3.6
+4.7
-1.6
+0.5
+0.4
stress
R2A with m-arsenite 0.078125 mM
+0.5
+1.1
+3.0
+2.0
+1.4
carbon source
a-Cyclodextrin 20 mM
-0.6
-2.2
+7.8
+1.9
+1.7
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