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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14430 and LRK54_RS14435 are separated by 35 nucleotides
LRK54_RS14435 and LRK54_RS14440 are separated by 63 nucleotides
LRK54_RS14440 and LRK54_RS14445 are separated by 106 nucleotides
LRK54_RS14445 and LRK54_RS14450 are separated by 41 nucleotides
LRK54_RS14430: LRK54_RS14430 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 3,209,756 to 3,210,592
_RS14430
LRK54_RS14435: LRK54_RS14435 - carboxymuconolactone decarboxylase family protein, at 3,210,628 to 3,211,089
_RS14435
LRK54_RS14440: LRK54_RS14440 - DNA-3-methyladenine glycosylase, at 3,211,153 to 3,211,743
_RS14440
LRK54_RS14445: LRK54_RS14445 - putative cation transport regulator ChaB, at 3,211,850 to 3,212,077
_RS14445
LRK54_RS14450: LRK54_RS14450 - hypothetical protein, at 3,212,119 to 3,212,619
_RS14450
Group
Condition
LRK54
_RS14430
LRK54
_RS14435
LRK54
_RS14440
LRK54
_RS14445
LRK54
_RS14450
phage
2A-T2
-0.2
-0.0
-0.0
-1.0
-1.7
phage
3E-T2
+0.1
+0.0
-0.1
+0.1
-2.5
phage
3B-T1
-0.6
-0.2
-0.3
+0.1
-1.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.2
-0.4
-0.4
-0.8
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.6
-0.2
-0.3
-0.4
-0.3
phage
1E-T2
-0.0
+0.1
-0.4
-0.3
-0.9
phage
SA-T2
-0.5
-0.2
-0.1
+0.1
-0.9
phage
1B-T1
-0.4
-0.0
-0.3
-0.3
-0.5
phage
2F-T1
-0.9
-0.1
-0.1
+0.1
-0.5
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.2
+0.1
-0.3
-0.1
-0.8
phage
1D-T2
-0.1
-0.2
-0.3
+0.1
-0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.5
-0.0
-0.5
-0.6
-0.4
phage
1A-T1
-0.2
-0.1
-0.3
+0.3
-0.7
stress
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM
+0.1
+0.0
+0.0
+0.1
-1.2
stress
R2A with Cesium chloride 3.90625 mM
+0.3
-0.0
-0.0
-0.1
-1.0
phage
1C-T1
-0.3
-0.0
+0.0
+0.4
-0.9
carbon source
a-Cyclodextrin 20 mM
+0.2
-0.0
+0.2
-0.1
-1.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
+0.4
+0.1
-0.8
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
-0.5
+0.1
+0.5
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.0
+0.2
+0.1
+0.6
-1.1
phage
2F-T2
-0.2
+0.1
+0.0
+0.6
-0.7
carbon source
D-Glucose-6-Phosphate 20 mM
+0.6
-0.1
+0.3
-0.2
-0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
+0.2
+0.4
-0.6
-0.4
stress
R2A with chromate 0.0048828125 mM
-0.0
+0.1
+0.2
-1.2
+0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.1
+0.4
+0.2
+0.3
-0.9
stress
R2A with Selective_ion_mix_1 1 X
+0.0
+0.1
+0.2
-0.6
+0.8
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.3
+0.3
+0.4
+0.2
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.4
-0.3
+0.4
+0.6
-0.0
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.5
-0.2
+0.3
-0.2
+0.9
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.4
+0.2
-0.0
+0.3
+0.8
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