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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14410 and LRK54_RS14415 are separated by 12 nucleotides
LRK54_RS14415 and LRK54_RS14420 are separated by 247 nucleotides
LRK54_RS14420 and LRK54_RS14425 are separated by 35 nucleotides
LRK54_RS14425 and LRK54_RS14430 are separated by 133 nucleotides
LRK54_RS14410: LRK54_RS14410 - DUF190 domain-containing protein, at 3,206,194 to 3,206,532
_RS14410
LRK54_RS14415: LRK54_RS14415 - fluoride efflux transporter CrcB, at 3,206,545 to 3,206,931
_RS14415
LRK54_RS14420: LRK54_RS14420 - multidrug effflux MFS transporter, at 3,207,179 to 3,208,444
_RS14420
LRK54_RS14425: LRK54_RS14425 - DUF2235 domain-containing protein, at 3,208,480 to 3,209,622
_RS14425
LRK54_RS14430: LRK54_RS14430 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 3,209,756 to 3,210,592
_RS14430
Group
Condition
LRK54
_RS14410
LRK54
_RS14415
LRK54
_RS14420
LRK54
_RS14425
LRK54
_RS14430
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.0
-0.8
-1.0
-0.0
+0.2
phage
2F-T1
-0.3
-0.2
+0.0
-0.2
-0.9
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.1
-0.3
-0.3
-0.2
stress
R2A with selenate 31.25 mM
-0.3
-0.2
-0.3
-0.1
-0.1
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.0
-0.1
-0.2
-0.2
-0.6
phage
3B-T1
+0.0
-0.1
-0.1
-0.1
-0.6
stress
R2A with FW104 filtrate 0.5 X
+0.0
-1.3
-0.1
+0.1
+0.2
stress
R2A with FW104 filtrate 0.5 X
-0.1
-1.1
+0.0
+0.1
+0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.4
+0.1
-0.2
+0.1
-0.4
phage
3E-T2
+0.1
-0.4
-0.3
-0.2
+0.1
stress
R2A with FW104 filtrate 0.5 X
-0.0
-0.9
+0.0
+0.1
+0.1
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.2
-0.2
-0.5
+0.1
+0.1
stress
R2A with Cesium chloride 3.90625 mM
-0.4
-0.2
-0.3
-0.1
+0.3
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
-0.2
-0.5
+0.3
+0.0
stress
R2A with Uranyl acetate 2.5 mM
-0.3
-0.4
-0.2
+0.0
+0.3
stress
R2A with Cobalt chloride 0.15625 mM
+0.3
-0.4
-0.2
-0.0
-0.1
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.1
+0.3
-0.0
+0.0
-0.5
stress
R2A with Nickel (II) chloride 0.625 mM
+0.0
+0.3
-0.6
-0.0
-0.1
stress
R2A with Nickel (II) chloride 0.625 mM
+0.1
+0.2
-0.7
+0.0
+0.1
stress
R2A with Cobalt chloride 0.15625 mM
+0.4
-0.2
-0.3
-0.1
+0.1
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.2
-0.3
-0.1
+0.1
+0.5
no stress control
no stress control
-0.1
+0.3
+0.1
+0.2
-0.4
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
+0.4
-0.5
-0.0
+0.1
+0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.3
+0.4
-0.1
+0.1
-0.4
pH
R2A pH6
+0.3
-0.4
-0.0
+0.1
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.1
-0.3
+0.2
+0.3
+0.2
carbon source
D-Glucose-6-Phosphate 20 mM
-0.2
-0.1
-0.1
+0.2
+0.6
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.4
-0.5
-0.2
+0.2
+0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.2
+1.0
+0.1
-0.1
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.3
+0.1
+0.4
-0.1
+0.5
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