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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14340 and LRK54_RS14345 are separated by 230 nucleotides
LRK54_RS14345 and LRK54_RS14350 are separated by 37 nucleotides
LRK54_RS14350 and LRK54_RS14355 are separated by 135 nucleotides
LRK54_RS14355 and LRK54_RS14360 are separated by 270 nucleotides
LRK54_RS14340: LRK54_RS14340 - biotin--protein ligase, at 3,193,355 to 3,193,645
_RS14340
LRK54_RS14345: LRK54_RS14345 - SDR family oxidoreductase, at 3,193,876 to 3,194,610
_RS14345
LRK54_RS14350: LRK54_RS14350 - NAD(P)-binding domain-containing protein, at 3,194,648 to 3,195,256
_RS14350
LRK54_RS14355: LRK54_RS14355 - LysR family transcriptional regulator, at 3,195,392 to 3,196,282
_RS14355
LRK54_RS14360: LRK54_RS14360 - hypothetical protein, at 3,196,553 to 3,196,987
_RS14360
Group
Condition
LRK54
_RS14340
LRK54
_RS14345
LRK54
_RS14350
LRK54
_RS14355
LRK54
_RS14360
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.9
-1.1
-0.2
+0.2
-0.3
stress
R2A with m-arsenite 0.078125 mM
-1.5
+0.2
-0.3
-0.1
+0.1
stress
R2A with chromate 0.0048828125 mM
-0.3
+0.6
-1.5
-0.2
-0.2
stress
R2A with lithium chloride 15.625 mM
-0.5
-0.7
-0.3
+0.0
+0.1
stress
R2A with nitrate 250 mM
-0.4
-0.4
-0.7
+0.0
+0.2
stress
R2A with Chloride 250 mM
-0.5
-0.4
-0.2
-0.2
-0.0
stress
R2A with Barium chloride 1.25 mM
-0.5
-0.3
-0.4
-0.0
+0.0
stress
R2A with nitrite 25 mM
-0.3
+0.1
-0.8
-0.3
+0.2
no phage control
No phage control
-0.3
-0.4
-0.3
-0.3
+0.2
r2a_control
R2A control
-0.3
-0.4
-0.6
+0.1
+0.1
stress
R2A with Cesium chloride 3.90625 mM
-0.8
-0.3
-0.1
-0.0
+0.1
r2a_control
R2A control
-0.4
-0.6
-0.3
+0.1
+0.2
stress
R2A with m-arsenite 0.078125 mM
-1.6
+0.2
+0.2
-0.0
+0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.6
-0.5
+0.1
+0.1
-0.1
stress
R2A with Barium chloride 1.25 mM
-0.5
-0.2
-0.6
+0.1
+0.2
phage
2A-T1
-0.4
-0.4
-0.2
-0.1
+0.2
stress
R2A with Chloride 250 mM
-0.5
+0.3
-0.6
-0.1
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.5
+0.2
-0.4
-0.2
-0.0
stress
R2A with Uranyl acetate 2.5 mM
-0.4
-0.5
-0.2
+0.2
+0.1
phage
1A-T1
-0.3
-0.5
+0.2
-0.3
+0.0
stress
R2A with Calcium chloride 250 mM
-0.8
+0.2
-0.3
+0.1
+0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.9
+0.5
+0.1
+0.1
stress
R2A with Selective_ion_mix_1 1 X
-0.3
+0.5
-0.4
-0.3
+0.1
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.4
-0.7
+0.7
+0.3
+0.0
phage
S3-T2
-0.4
+0.5
+0.3
-0.1
-0.0
no stress control
no stress control
+0.2
+0.4
-0.5
+0.2
+0.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.2
+0.2
+0.5
-0.4
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.1
+0.5
+0.6
-0.1
-0.2
stress
R2A with Cobalt chloride 0.15625 mM
+0.5
+0.4
+0.1
+0.2
-0.3
phage
4E-T1
-0.2
+0.8
+0.7
+0.1
+0.1
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