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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14320 and LRK54_RS14325 overlap by 4 nucleotides
LRK54_RS14325 and LRK54_RS14330 are separated by 150 nucleotides
LRK54_RS14330 and LRK54_RS14335 are separated by 40 nucleotides
LRK54_RS14335 and LRK54_RS14340 overlap by 4 nucleotides
LRK54_RS14320: LRK54_RS14320 - penicillin acylase family protein, at 3,188,721 to 3,191,135
_RS14320
LRK54_RS14325: LRK54_RS14325 - phosphodiester glycosidase family protein, at 3,191,132 to 3,191,902
_RS14325
LRK54_RS14330: LRK54_RS14330 - 8-oxo-dGTP diphosphatase, at 3,192,053 to 3,192,541
_RS14330
LRK54_RS14335: LRK54_RS14335 - lipoate--protein ligase family protein, at 3,192,582 to 3,193,358
_RS14335
LRK54_RS14340: LRK54_RS14340 - biotin--protein ligase, at 3,193,355 to 3,193,645
_RS14340
Group
Condition
LRK54
_RS14320
LRK54
_RS14325
LRK54
_RS14330
LRK54
_RS14335
LRK54
_RS14340
stress
R2A with m-arsenite 0.078125 mM
+0.1
-0.2
-0.4
-1.5
-1.6
stress
R2A with m-arsenite 0.078125 mM
+0.2
-0.1
-0.5
-1.2
-1.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.0
-0.1
-1.2
+0.1
-0.3
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.1
-0.2
-0.5
-0.9
+0.2
stress
R2A with nitrite 25 mM
+0.0
-0.2
-0.7
+0.1
-0.4
stress
R2A with nitrite 50 mM
+0.2
-0.2
-0.3
-0.2
-0.5
stress
R2A with silver chloride 1 mM
+0.3
-0.3
-0.0
-0.2
-0.8
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
+0.3
-0.5
-0.2
-0.3
-0.4
stress
R2A with Calcium chloride 250 mM
+0.3
+0.3
-0.2
-0.5
-0.8
stress
R2A with Calcium chloride 250 mM
+0.2
+0.2
-0.3
-0.5
-0.4
r2a_control
R2A control
+0.3
+0.1
-0.2
-0.6
-0.4
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
+0.3
+0.0
-0.5
-0.9
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.5
-0.0
-0.2
-0.7
-0.4
stress
R2A with mercury (II) chloride 0.009765625 mM
+0.4
-0.1
-0.2
-0.3
-0.6
stress
R2A with Magnesium sulfate 3.90625 mM
+0.2
+0.2
-0.2
-0.3
-0.6
r2a_control
R2A control
+0.2
+0.3
-0.3
-0.2
-0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.4
+0.4
-0.7
-0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+0.2
-0.5
+0.3
-0.6
+0.2
stress
R2A with Cesium chloride 3.90625 mM
+0.3
+0.2
-0.1
-0.0
-0.8
carbon source
a-Cyclodextrin 20 mM
-0.1
-1.0
-0.2
+0.4
+0.6
carbon source
a-Cyclodextrin 20 mM
-0.1
-0.7
-0.3
+0.5
+0.5
phage
1C-T2
+0.2
+0.2
+0.3
-0.2
-0.6
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.0
+0.7
-0.6
-0.1
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.1
-0.0
-0.6
+0.5
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.1
+0.6
-0.6
-0.0
+0.4
stress
R2A with chromate 0.0048828125 mM
-0.1
-0.1
+0.3
+0.7
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.2
+0.6
-0.5
+0.2
+0.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.2
+0.9
-0.3
+0.1
-0.0
stress
R2A with Cobalt chloride 0.15625 mM
-0.3
-0.2
+0.2
+0.8
+0.5
stress
R2A with Cobalt chloride 0.15625 mM
-0.3
+0.2
-0.0
+1.1
+0.6
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