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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS14305 and LRK54_RS14310 overlap by 1 nucleotides
LRK54_RS14310 and LRK54_RS14315 are separated by 52 nucleotides
LRK54_RS14315 and LRK54_RS14320 are separated by 118 nucleotides
LRK54_RS14320 and LRK54_RS14325 overlap by 4 nucleotides
LRK54_RS14305: LRK54_RS14305 - NosR/NirI family protein, at 3,184,211 to 3,186,403
_RS14305
LRK54_RS14310: LRK54_RS14310 - FAD:protein FMN transferase, at 3,186,403 to 3,187,470
_RS14310
LRK54_RS14315: LRK54_RS14315 - NAD(P)/FAD-dependent oxidoreductase, at 3,187,523 to 3,188,602
_RS14315
LRK54_RS14320: LRK54_RS14320 - penicillin acylase family protein, at 3,188,721 to 3,191,135
_RS14320
LRK54_RS14325: LRK54_RS14325 - phosphodiester glycosidase family protein, at 3,191,132 to 3,191,902
_RS14325
Group
Condition
LRK54
_RS14305
LRK54
_RS14310
LRK54
_RS14315
LRK54
_RS14320
LRK54
_RS14325
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.4
-0.4
-0.3
+0.1
-0.2
carbon source
a-Cyclodextrin 20 mM
-0.2
+0.3
-0.0
-0.1
-1.0
carbon source
Gly-Glu 20 mM
-0.2
-0.1
+0.1
+0.1
-0.8
stress
R2A with silver chloride 1 mM
-0.0
-0.5
-0.3
+0.3
-0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
-0.2
-0.4
-0.0
+0.3
-0.5
phage
S5-T1
-0.0
-0.4
+0.0
+0.1
-0.5
phage
3E-T1
-0.1
+0.3
-0.2
-0.2
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.5
+0.2
-0.4
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.6
-0.1
+0.5
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.2
-0.9
+0.3
-0.1
+0.6
no stress control
no stress control
+0.1
-0.6
-0.0
+0.2
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.3
+0.5
-0.2
+0.0
-0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.3
-0.2
-0.1
+0.3
+0.3
carbon source
a-Cyclodextrin 20 mM
-0.3
+1.0
+0.2
-0.1
-0.7
no stress control
no stress control
-0.3
-0.6
+0.2
+0.4
+0.3
r2a_control
R2A control
-0.2
+0.3
-0.2
+0.3
+0.1
stress
R2A_PIPES with Aluminum chloride 1.125 mM
-0.0
+0.3
+0.3
+0.2
-0.5
stress
R2A with Chloride 250 mM
-0.1
+0.2
-0.3
+0.2
+0.2
carbon source
D-Glucose-6-Phosphate 20 mM
-0.1
+0.7
+0.2
-0.2
-0.3
stress
R2A with Calcium chloride 250 mM
-0.1
+0.2
-0.3
+0.3
+0.3
stress
R2A with Chloride 250 mM
-0.1
+0.3
-0.2
+0.2
+0.2
pH
R2A_PIPES pH 4.25
-0.2
+0.3
-0.1
+0.3
+0.2
phage
2E-T2
+0.2
+0.2
+0.1
+0.3
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.3
+0.2
-0.0
+0.2
+0.6
stress
R2A with mercury (II) chloride 0.009765625 mM
+0.0
+0.7
-0.2
+0.4
-0.1
stress
R2A with Barium chloride 1.25 mM
+0.0
+0.4
-0.1
+0.2
+0.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.1
+0.1
+0.5
+0.3
-0.1
phage
1C-T2
+0.2
+0.4
-0.1
+0.2
+0.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.1
+0.3
+0.1
-0.2
+0.9
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.0
+0.6
-0.1
+0.3
+0.3
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