Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS14305 and LRK54_RS14310 overlap by 1 nucleotidesLRK54_RS14310 and LRK54_RS14315 are separated by 52 nucleotidesLRK54_RS14315 and LRK54_RS14320 are separated by 118 nucleotidesLRK54_RS14320 and LRK54_RS14325 overlap by 4 nucleotides LRK54_RS14305: LRK54_RS14305 - NosR/NirI family protein, at 3,184,211 to 3,186,403 _RS14305 LRK54_RS14310: LRK54_RS14310 - FAD:protein FMN transferase, at 3,186,403 to 3,187,470 _RS14310 LRK54_RS14315: LRK54_RS14315 - NAD(P)/FAD-dependent oxidoreductase, at 3,187,523 to 3,188,602 _RS14315 LRK54_RS14320: LRK54_RS14320 - penicillin acylase family protein, at 3,188,721 to 3,191,135 _RS14320 LRK54_RS14325: LRK54_RS14325 - phosphodiester glycosidase family protein, at 3,191,132 to 3,191,902 _RS14325
Group Condition LRK54_RS14305 LRK54_RS14310 LRK54_RS14315 LRK54_RS14320 LRK54_RS14325
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.4 -0.4 -0.3 +0.1 -0.2
carbon source a-Cyclodextrin 20 mM -0.2 +0.3 -0.0 -0.1 -1.0
carbon source Gly-Glu 20 mM -0.2 -0.1 +0.1 +0.1 -0.8
stress R2A with silver chloride 1 mM -0.0 -0.5 -0.3 +0.3 -0.3
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -0.2 -0.4 -0.0 +0.3 -0.5
phage S5-T1 -0.0 -0.4 +0.0 +0.1 -0.5
phage 3E-T1 -0.1 +0.3 -0.2 -0.2 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 -0.5 +0.2 -0.4 +0.4
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.5 -0.6 -0.1 +0.5 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 -0.9 +0.3 -0.1 +0.6
no stress control no stress control +0.1 -0.6 -0.0 +0.2 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.3 +0.5 -0.2 +0.0 -0.1
stress R2A_PIPES with Nickel (II) chloride 424 uM -0.3 -0.2 -0.1 +0.3 +0.3
carbon source a-Cyclodextrin 20 mM -0.3 +1.0 +0.2 -0.1 -0.7
no stress control no stress control -0.3 -0.6 +0.2 +0.4 +0.3
r2a_control R2A control -0.2 +0.3 -0.2 +0.3 +0.1
stress R2A_PIPES with Aluminum chloride 1.125 mM -0.0 +0.3 +0.3 +0.2 -0.5
stress R2A with Chloride 250 mM -0.1 +0.2 -0.3 +0.2 +0.2
carbon source D-Glucose-6-Phosphate 20 mM -0.1 +0.7 +0.2 -0.2 -0.3
stress R2A with Calcium chloride 250 mM -0.1 +0.2 -0.3 +0.3 +0.3
stress R2A with Chloride 250 mM -0.1 +0.3 -0.2 +0.2 +0.2
pH R2A_PIPES pH 4.25 -0.2 +0.3 -0.1 +0.3 +0.2
phage 2E-T2 +0.2 +0.2 +0.1 +0.3 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 +0.2 -0.0 +0.2 +0.6
stress R2A with mercury (II) chloride 0.009765625 mM +0.0 +0.7 -0.2 +0.4 -0.1
stress R2A with Barium chloride 1.25 mM +0.0 +0.4 -0.1 +0.2 +0.3
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.1 +0.1 +0.5 +0.3 -0.1
phage 1C-T2 +0.2 +0.4 -0.1 +0.2 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.1 +0.3 +0.1 -0.2 +0.9
stress R2A with bismuth(III) chloride 0.03125 mM +0.0 +0.6 -0.1 +0.3 +0.3
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