Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS14240 and LRK54_RS14245 are separated by 99 nucleotidesLRK54_RS14245 and LRK54_RS14250 are separated by 86 nucleotidesLRK54_RS14250 and LRK54_RS14255 are separated by 234 nucleotidesLRK54_RS14255 and LRK54_RS14260 overlap by 4 nucleotides LRK54_RS14240: LRK54_RS14240 - tRNA-Val, at 3,174,236 to 3,174,310 _RS14240 LRK54_RS14245: LRK54_RS14245 - hypothetical protein, at 3,174,410 to 3,174,733 _RS14245 LRK54_RS14250: LRK54_RS14250 - hypothetical protein, at 3,174,820 to 3,175,098 _RS14250 LRK54_RS14255: LRK54_RS14255 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 3,175,333 to 3,176,160 _RS14255 LRK54_RS14260: LRK54_RS14260 - Spx/MgsR family RNA polymerase-binding regulatory protein, at 3,176,157 to 3,176,513 _RS14260
Group Condition LRK54_RS14240 LRK54_RS14245 LRK54_RS14250 LRK54_RS14255 LRK54_RS14260
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. -1.3 +0.3 N.D. -3.3
stress R2A_PIPES with Nickel (II) chloride 424 uM N.D. -3.0 +0.3 N.D. -0.5
stress R2A with lithium chloride 15.625 mM N.D. -2.2 -0.3 N.D. -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. -0.8 +0.0 N.D. -1.8
no phage control No phage control N.D. -1.9 -0.1 N.D. -0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. -0.9 -0.3 N.D. -1.2
stress R2A with Nickel (II) chloride 0.3125 mM N.D. -0.8 -0.3 N.D. -0.9
stress R2A with silver chloride 1 mM N.D. +1.0 -0.1 N.D. -2.9
no stress control no stress control N.D. -2.0 -0.1 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. -0.1 +0.1 N.D. -1.9
phage 2A-T2 N.D. -1.8 -0.1 N.D. +0.0
carbon source D-Glucose (C) and 20 AA mix; 30C N.D. -0.6 -0.1 N.D. -1.1
carbon source D-Glucose (C) and 20 AA mix; 20C N.D. -1.1 -0.1 N.D. -0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. -0.7 +0.1 N.D. -1.2
stress R2A with FW104 filtrate 0.5 X N.D. -1.4 +0.1 N.D. -0.3
stress R2A with m-arsenite 0.078125 mM N.D. -1.0 +0.1 N.D. -0.7
stress R2A with Gallium(III)chloride 0.78125 mM N.D. +0.1 -0.1 N.D. -1.5
phage 1B-T1 N.D. -1.4 +0.2 N.D. -0.2
phage SA-T1 N.D. -1.2 +0.3 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +2.0 -0.2 N.D. -2.9
stress R2A_PIPES with Cadmium chloride 16 uM N.D. +0.5 +0.0 N.D. -1.6
pH R2A pH7 N.D. -1.3 -0.0 N.D. +0.5
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM N.D. +0.6 +0.2 N.D. -1.6
biofilm assay; planktonic sample planktonic; Day1; NLDM; N.D. +0.7 -0.2 N.D. -1.1
phage 1D-T2 N.D. -1.4 +0.2 N.D. +0.8
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. +0.8 -0.0 N.D. -0.8
pH R2A_PIPES pH 4.25 N.D. -1.3 +0.1 N.D. +1.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. +1.1 +0.1 N.D. -0.4
stress R2A with bismuth(III) chloride 0.03125 mM N.D. +1.9 -0.1 N.D. -0.4
stress R2A_PIPES with Cadmium chloride 16 uM N.D. +1.1 -0.2 N.D. +0.7
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