Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS14080 and LRK54_RS14085 overlap by 4 nucleotidesLRK54_RS14085 and LRK54_RS14090 are separated by 44 nucleotidesLRK54_RS14090 and LRK54_RS14095 are separated by 245 nucleotidesLRK54_RS14095 and LRK54_RS14100 are separated by 186 nucleotides LRK54_RS14080: LRK54_RS14080 - DUF2238 domain-containing protein, at 3,141,891 to 3,142,577 _RS14080 LRK54_RS14085: LRK54_RS14085 - universal stress protein, at 3,142,574 to 3,143,404 _RS14085 LRK54_RS14090: LRK54_RS14090 - GNAT family N-acetyltransferase, at 3,143,449 to 3,144,021 _RS14090 LRK54_RS14095: LRK54_RS14095 - cyclic nucleotide-binding domain-containing protein, at 3,144,267 to 3,145,028 _RS14095 LRK54_RS14100: LRK54_RS14100 - cytochrome b, at 3,145,215 to 3,145,778 _RS14100
Group Condition LRK54_RS14080 LRK54_RS14085 LRK54_RS14090 LRK54_RS14095 LRK54_RS14100
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.1 -0.2 -0.1 +0.5 -2.5
no phage control No phage control -0.3 -0.3 -0.9 -0.3 -0.6
phage SA-T2 -0.1 -0.3 -0.8 -0.6 -0.4
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.0 +0.2 +0.3 -2.6 -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 +0.4 +0.2 -2.2 -0.5
phage 3C-T2 -0.4 -0.5 -0.3 -0.4 -0.4
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.1 +0.1 -0.1 +0.3 -2.1
phage 4B-T1 -0.6 -0.1 -0.5 -0.1 -0.5
stress R2A with Calcium chloride 125 mM -0.2 +0.0 -0.4 -0.2 -0.9
stress R2A with Calcium chloride 250 mM -0.2 -0.0 -0.3 +0.4 -1.4
phage 1D-T2 +0.2 -0.2 -0.7 -0.3 -0.2
phage 1A-T2 -0.2 -0.4 +0.2 -0.4 -0.4
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.1 +0.1 +0.3 +0.2 -1.6
stress R2A with Aluminum chloride 3.125 mM +0.0 +0.0 -0.3 +0.3 -0.8
stress R2A with Gallium(III)chloride 0.78125 mM -0.1 +0.0 -0.4 +0.3 -0.5
phage 4E-T2 +0.1 -0.2 +0.5 -0.5 -0.6
stress R2A_PIPES with Aluminum chloride 1.125 mM +0.3 +0.2 -1.0 +0.1 -0.1
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.5 +0.1 +0.3 -0.4 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.1 +0.2 +0.1 +0.5 -1.0
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.2 +0.1 -0.1 +0.9 -1.3
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.0 -0.1 -0.2 +0.7 -0.3
stress R2A_PIPES with Cobalt chloride 256 uM +0.1 +0.2 +0.2 +0.4 -0.7
stress R2A_PIPES with Cobalt chloride 256 uM -0.1 +0.1 +0.3 +0.5 -0.6
stress R2A with Aluminum chloride 3.125 mM -0.2 +0.1 +0.2 +0.8 -0.7
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM -0.0 +0.1 +0.2 +0.4 -0.5
carbon source D-Glucose-6-Phosphate 20 mM +0.0 -0.0 +0.1 -0.2 +1.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 +0.2 +1.0 -0.1 +0.0
carbon source a-Cyclodextrin 20 mM -0.3 -0.1 +0.8 +0.1 +0.8
carbon source D-Glucose-6-Phosphate 20 mM -0.1 -0.1 +0.2 -0.3 +1.6
carbon source a-Cyclodextrin 20 mM -0.1 +0.2 +0.7 +0.2 +0.6
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