Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13930 and LRK54_RS13935 overlap by 4 nucleotidesLRK54_RS13935 and LRK54_RS13940 are separated by 10 nucleotidesLRK54_RS13940 and LRK54_RS13945 are separated by 16 nucleotidesLRK54_RS13945 and LRK54_RS13950 are separated by 77 nucleotides LRK54_RS13930: LRK54_RS13930 - thymidine phosphorylase, at 3,108,688 to 3,110,022 _RS13930 LRK54_RS13935: LRK54_RS13935 - phosphopentomutase, at 3,110,019 to 3,111,227 _RS13935 LRK54_RS13940: LRK54_RS13940 - purine-nucleoside phosphorylase, at 3,111,238 to 3,111,951 _RS13940 LRK54_RS13945: LRK54_RS13945 - molybdopterin-synthase adenylyltransferase MoeB, at 3,111,968 to 3,113,146 _RS13945 LRK54_RS13950: LRK54_RS13950 - hypothetical protein, at 3,113,224 to 3,113,628 _RS13950
Group Condition LRK54_RS13930 LRK54_RS13935 LRK54_RS13940 LRK54_RS13945 LRK54_RS13950
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.1 -0.0 -0.2 -3.1 N.D.
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.2 +0.1 +0.2 -3.1 N.D.
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.0 +0.0 -0.1 -2.0 N.D.
phage 3E-T1 -0.3 -0.7 -0.8 -0.1 N.D.
phage 4B-T2 -0.0 -0.5 -1.1 -0.2 N.D.
no phage control No phage control -0.2 -0.3 -0.7 -0.3 N.D.
phage S3-T1 -0.3 -0.6 -0.3 -0.1 N.D.
phage 1B-T1 -0.4 -0.3 -0.5 -0.1 N.D.
phage S3-T2 -0.1 -0.2 -0.9 -0.1 N.D.
phage 4E-T2 +0.1 -0.4 -0.9 -0.1 N.D.
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.1 +0.0 +0.0 -1.3 N.D.
phage 3C-T2 -0.3 -0.3 -0.0 -0.4 N.D.
phage SA-T2 -0.2 -0.2 -0.3 -0.4 N.D.
phage 2B-T1 -0.3 -0.3 -0.3 -0.2 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.0 -0.7 +0.0 N.D.
stress R2A with nitrate 250 mM -0.2 +0.1 -0.8 -0.1 N.D.
phage 1C-T1 -0.0 -0.3 -0.3 -0.2 N.D.
phage 4E-T1 -0.2 -0.1 -0.6 +0.1 N.D.
phage 3E-T2 +0.1 -0.5 -0.1 -0.2 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 +0.2 -0.4 -0.4 N.D.
stress R2A with bismuth(III) chloride 0.03125 mM +0.2 -0.5 -0.3 +0.1 N.D.
stress R2A with Selective_ion_mix_1 1 X -0.1 +0.3 -0.4 -0.1 N.D.
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.5 -0.0 -0.2 +0.3 N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.5 +0.1 +0.3 -0.2 N.D.
pH R2A_PIPES pH 4.25 -0.4 -0.2 +0.4 +0.0 N.D.
biofilm assay; biofilm sample biofilm; Day1; NLDM; +0.1 +0.2 +0.3 -0.2 N.D.
pH R2A_PIPES pH 4.25 -0.1 +0.1 +0.5 +0.2 N.D.
phage 1C-T2 +0.0 -0.2 +0.4 +0.5 N.D.
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.1 +0.2 +0.4 +0.3 N.D.
stress R2A with Calcium chloride 250 mM +0.1 +0.1 +0.6 +0.3 N.D.
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