Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13650 and LRK54_RS13655 are separated by 18 nucleotidesLRK54_RS13655 and LRK54_RS13660 are separated by 2 nucleotidesLRK54_RS13660 and LRK54_RS13665 overlap by 4 nucleotidesLRK54_RS13665 and LRK54_RS13670 are separated by 77 nucleotides LRK54_RS13650: LRK54_RS13650 - chemotaxis protein CheW, at 3,052,219 to 3,052,725 _RS13650 LRK54_RS13655: LRK54_RS13655 - methyl-accepting chemotaxis protein, at 3,052,744 to 3,054,465 _RS13655 LRK54_RS13660: LRK54_RS13660 - protein-glutamate O-methyltransferase, at 3,054,468 to 3,055,352 _RS13660 LRK54_RS13665: LRK54_RS13665 - chemoreceptor glutamine deamidase CheD, at 3,055,349 to 3,055,999 _RS13665 LRK54_RS13670: LRK54_RS13670 - chemotaxis response regulator protein-glutamate methylesterase, at 3,056,077 to 3,057,168 _RS13670
Group Condition LRK54_RS13650 LRK54_RS13655 LRK54_RS13660 LRK54_RS13665 LRK54_RS13670
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.1 -0.5 -0.5 -0.5 -0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.4 -0.5 -0.3 -0.5 -0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.4 -0.3 -0.3 -0.3 -0.3
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.2 -0.2 -0.5 -0.3 -0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.4 -0.1 -0.2 -0.1 -0.7
phage 4E-T1 -0.0 -0.3 +0.0 -0.5 -0.7
biofilm assay; biofilm sample biofilm; Day2; NLDM; -1.0 -0.5 +0.2 -0.0 -0.3
phage 2B-T2 -0.6 +0.2 -0.4 -0.4 -0.3
phage S5-T1 +0.1 -0.1 -0.5 -0.5 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.9 -0.2 +0.2 +0.2 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.5 -0.2 -0.0 +0.5 -0.3
stress R2A with chromate 0.0048828125 mM -0.4 +0.2 -0.3 -0.6 +0.4
phage 4B-T1 +0.5 -0.2 -0.0 -0.6 -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.2 +0.6 -0.1 -0.1 -0.6
carbon source a-Cyclodextrin 20 mM +0.6 -0.0 -0.1 -0.5 -0.2
stress R2A with bismuth(III) chloride 0.03125 mM +0.7 +0.4 -0.4 -0.4 -0.0
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.8 -0.2 -0.1 -0.2 +0.2
carbon source acetate 20 mM +0.2 +0.4 -0.3 +0.3 -0.2
phage phage 31.1 -0.2 +0.5 -0.2 +0.4 +0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 +0.0 +0.3 +0.6 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 +0.4 +0.1 +0.3 +0.4
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.5 +0.0 +0.6 +0.5 +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 +0.5 +0.2 +0.6 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 +0.4 +0.6 +0.2 -0.1
carbon source Gly-Glu 20 mM +0.3 +0.4 +0.2 +0.4 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.4 +0.3 +0.4 +0.1 +0.4
carbon source D-Trehalose 20 mM +0.7 +0.2 +0.1 +0.3 +0.4
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.5 +1.0 +0.3 +0.1 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 +0.4 +0.4 +0.6 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.6 +0.7 +0.5 +0.2 +0.1
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