Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13505 and LRK54_RS13510 are separated by 115 nucleotidesLRK54_RS13510 and LRK54_RS13515 overlap by 4 nucleotidesLRK54_RS13515 and LRK54_RS13520 are separated by 91 nucleotidesLRK54_RS13520 and LRK54_RS13525 are separated by 231 nucleotides LRK54_RS13505: LRK54_RS13505 - flagellar assembly protein FliH, at 3,025,082 to 3,025,702 _RS13505 LRK54_RS13510: LRK54_RS13510 - flagellar protein export ATPase FliI, at 3,025,818 to 3,027,185 _RS13510 LRK54_RS13515: LRK54_RS13515 - flagellar export protein FliJ, at 3,027,182 to 3,027,607 _RS13515 LRK54_RS13520: LRK54_RS13520 - flagellar hook-length control protein FliK, at 3,027,699 to 3,028,799 _RS13520 LRK54_RS13525: LRK54_RS13525 - flagellar basal body-associated FliL family protein, at 3,029,031 to 3,029,564 _RS13525
Group Condition LRK54_RS13505 LRK54_RS13510 LRK54_RS13515 LRK54_RS13520 LRK54_RS13525
carbon source a-Cyclodextrin 20 mM -0.5 -0.4 -3.5 N.D. -0.4
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -2.3 -0.3 -0.8 N.D. -0.2
stress R2A with Cobalt chloride 0.15625 mM -0.3 -0.3 -1.8 N.D. +0.0
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.1 -0.6 -1.3 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.3 -0.5 -0.3 N.D. -1.0
stress R2A with chromate 0.0048828125 mM +0.4 -0.0 -2.1 N.D. -0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.1 +0.2 -2.1 N.D. +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.6 -0.6 +0.7 N.D. -0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.2 +0.9 +1.0 N.D. -0.4
stress R2A with nitrite 25 mM +0.6 +0.3 +0.7 N.D. +0.5
stress R2A with bismuth(III) chloride 0.03125 mM +0.7 +0.3 +1.0 N.D. +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.8 +0.4 +1.6 N.D. -0.6
carbon source L-Glutamic 20 mM +0.6 +0.6 +0.6 N.D. +0.5
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.4 +0.7 +0.8 N.D. +0.3
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.7 +0.6 +0.4 N.D. +0.6
carbon source NAG 20 mM +0.4 +0.5 +1.1 N.D. +0.3
carbon source D-Glucose 20 mM +0.5 +0.8 +0.8 N.D. +0.4
carbon source D-Glucose (C) and 20 AA mix; 20C +0.6 +0.5 +1.0 N.D. +0.3
carbon source D-Glucose (C); 30C +0.3 +0.6 +1.3 N.D. +0.3
carbon source casaminos 2 mg/mL +0.6 +0.7 +0.7 N.D. +0.6
carbon source L-Glutamic 20 mM +0.7 +0.6 +0.7 N.D. +0.6
stress R2A with Cesium chloride 3.90625 mM +0.8 +0.7 +0.6 N.D. +0.5
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.6 +0.6 +0.9 N.D. +0.5
carbon source Gly-Glu 20 mM +0.7 +0.8 +0.8 N.D. +0.4
carbon source casaminos 2 mg/mL +0.6 +0.8 +0.8 N.D. +0.7
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.2 +0.9 +0.9 N.D. +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.6 +1.8 +0.5 N.D. +0.3
carbon source D-Trehalose 20 mM +0.9 +1.1 +1.5 N.D. +1.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.7 +1.8 +1.6 N.D. +0.9
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.9 +1.9 +2.1 N.D. +0.9
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