Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13490 and LRK54_RS13495 are separated by 47 nucleotidesLRK54_RS13495 and LRK54_RS13500 overlap by 11 nucleotidesLRK54_RS13500 and LRK54_RS13505 overlap by 1 nucleotidesLRK54_RS13505 and LRK54_RS13510 are separated by 115 nucleotides LRK54_RS13490: LRK54_RS13490 - flagellar hook-basal body complex protein FliE, at 3,021,999 to 3,022,325 _RS13490 LRK54_RS13495: LRK54_RS13495 - flagellar M-ring protein FliF, at 3,022,373 to 3,024,076 _RS13495 LRK54_RS13500: LRK54_RS13500 - flagellar motor switch protein FliG, at 3,024,066 to 3,025,082 _RS13500 LRK54_RS13505: LRK54_RS13505 - flagellar assembly protein FliH, at 3,025,082 to 3,025,702 _RS13505 LRK54_RS13510: LRK54_RS13510 - flagellar protein export ATPase FliI, at 3,025,818 to 3,027,185 _RS13510
Group Condition LRK54_RS13490 LRK54_RS13495 LRK54_RS13500 LRK54_RS13505 LRK54_RS13510
biofilm assay; biofilm sample biofilm; Day1; NLDM; N.D. -1.3 -1.1 -0.3 -0.5
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. -0.3 -0.2 -2.3 -0.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; N.D. -1.3 -0.9 -0.8 -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; N.D. -1.1 -1.1 -0.2 +0.0
phage 4E-T1 N.D. -0.8 -0.5 -0.2 -0.6
phage SA-T1 N.D. -0.3 -0.8 -0.4 -0.6
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 N.D. +0.3 +0.7 -0.2 +0.9
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors N.D. +0.5 +0.7 +0.2 +0.6
carbon source NAG 20 mM N.D. +0.5 +0.6 +0.4 +0.5
stress R2A with m-arsenite 0.078125 mM N.D. +0.6 +0.6 +0.5 +0.3
pH R2A pH6 N.D. +0.6 +0.5 +0.7 +0.3
carbon source D-Glucose 20 mM N.D. +0.4 +0.4 +0.5 +0.8
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. +0.6 +0.3 +0.6 +0.6
stress R2A with Magnesium sulfate 3.90625 mM N.D. +0.6 +0.5 +0.4 +0.7
anaerobic Anaerobic, acetate donor; nitrate electron acceptor N.D. +0.4 +0.6 +0.4 +0.7
stress R2A with Magnesium sulfate 3.90625 mM N.D. +0.6 +0.5 +0.4 +0.7
carbon source Gly-Glu 20 mM N.D. +0.6 +0.6 +0.8 +0.6
carbon source D-Glucose (C) and 20 AA mix; 20C N.D. +0.6 +0.8 +0.6 +0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.3 +0.2 +1.2 +0.9
carbon source L-Glutamic 20 mM N.D. +0.6 +0.8 +0.6 +0.6
carbon source L-Glutamic 20 mM N.D. +0.6 +0.6 +0.7 +0.6
stress R2A with Cesium chloride 3.90625 mM N.D. +0.7 +0.5 +0.8 +0.7
carbon source casaminos 2 mg/mL N.D. +0.6 +0.8 +0.6 +0.7
anaerobic Anaerobic, acetate donor; nitrate electron acceptor N.D. +0.7 +0.7 +0.7 +0.6
carbon source casaminos 2 mg/mL N.D. +0.7 +0.8 +0.6 +0.8
carbon source Gly-Glu 20 mM N.D. +0.8 +0.8 +0.7 +0.8
carbon source D-Trehalose 20 mM N.D. +1.1 +1.1 +0.9 +1.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.4 +0.9 +1.6 +1.8
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.5 +1.0 +1.7 +1.8
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.8 +1.0 +1.9 +1.9
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