Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13475 and LRK54_RS13480 are separated by 173 nucleotidesLRK54_RS13480 and LRK54_RS13485 are separated by 350 nucleotidesLRK54_RS13485 and LRK54_RS13490 are separated by 161 nucleotidesLRK54_RS13490 and LRK54_RS13495 are separated by 47 nucleotides LRK54_RS13475: LRK54_RS13475 - flagellar protein FliT, at 3,018,996 to 3,019,274 _RS13475 LRK54_RS13480: LRK54_RS13480 - PilZ domain-containing protein, at 3,019,448 to 3,020,062 _RS13480 LRK54_RS13485: LRK54_RS13485 - sigma-54-dependent Fis family transcriptional regulator, at 3,020,413 to 3,021,837 _RS13485 LRK54_RS13490: LRK54_RS13490 - flagellar hook-basal body complex protein FliE, at 3,021,999 to 3,022,325 _RS13490 LRK54_RS13495: LRK54_RS13495 - flagellar M-ring protein FliF, at 3,022,373 to 3,024,076 _RS13495
Group Condition LRK54_RS13475 LRK54_RS13480 LRK54_RS13485 LRK54_RS13490 LRK54_RS13495
biofilm assay; biofilm sample biofilm; Day1; NLDM; -1.0 -1.3 +0.1 N.D. -1.3
biofilm assay; biofilm sample biofilm; Day1; NLDM; -1.5 -0.6 +0.0 N.D. -1.3
stress R2A with ammonium iron(II) sulfate 2.5 mM -1.2 -0.5 -0.3 N.D. -0.5
biofilm assay; biofilm sample biofilm; Day1; NLDM; -1.0 -0.2 +0.2 N.D. -1.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -2.1 +0.1 +0.3 N.D. -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -1.5 -0.4 +1.3 N.D. -0.5
phage SA-T1 -0.7 +0.7 +0.3 N.D. -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.7 -0.3 +1.4 N.D. -0.1
stress R2A with bismuth(III) chloride 0.03125 mM +0.8 -0.3 +0.6 N.D. +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.4 +1.1 N.D. +0.3
stress R2A with m-arsenite 0.078125 mM -0.2 +0.4 +0.8 N.D. +0.6
stress R2A with Magnesium sulfate 3.90625 mM -0.3 +0.5 +0.9 N.D. +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 +0.3 +1.5 N.D. +0.4
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.4 +0.5 +0.7 N.D. +0.4
pH R2A pH7 +0.4 +0.5 +0.6 N.D. +0.4
stress R2A with Other_metal_mix 1 X +0.4 +0.4 +0.8 N.D. +0.3
stress R2A with nitrite 25 mM +0.4 +0.3 +0.8 N.D. +0.5
stress R2A with Cadmium chloride hemipentahydrate 0.0390625 mM +0.6 +0.4 +0.6 N.D. +0.5
pH R2A pH6 +0.4 +0.5 +0.6 N.D. +0.6
pH R2A pH7 +0.5 +0.7 +0.5 N.D. +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.9 -0.8 +1.5 N.D. +0.5
stress R2A with m-arsenite 0.078125 mM +0.5 +0.4 +0.8 N.D. +0.5
carbon source casaminos 2 mg/mL +0.3 +0.5 +0.9 N.D. +0.6
carbon source Gly-Glu 20 mM +0.4 +0.5 +0.7 N.D. +0.6
carbon source Gly-Glu 20 mM +0.1 +0.5 +1.0 N.D. +0.8
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.6 +0.7 +0.5 N.D. +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.2 +2.2 N.D. +0.8
carbon source casaminos 2 mg/mL +0.3 +0.7 +0.8 N.D. +0.7
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.3 +0.9 +1.6 N.D. +0.7
carbon source D-Trehalose 20 mM +0.9 +0.7 +1.3 N.D. +1.1
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