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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS13415 and LRK54_RS13420 are separated by 37 nucleotides
LRK54_RS13420 and LRK54_RS13425 are separated by 146 nucleotides
LRK54_RS13425 and LRK54_RS13430 are separated by 50 nucleotides
LRK54_RS13430 and LRK54_RS13435 are separated by 11 nucleotides
LRK54_RS13415: LRK54_RS13415 - flagellar hook capping protein, at 3,005,765 to 3,006,403
_RS13415
LRK54_RS13420: LRK54_RS13420 - flagellar hook protein FlgE, at 3,006,441 to 3,007,664
_RS13420
LRK54_RS13425: LRK54_RS13425 - flagellar basal-body rod protein FlgF, at 3,007,811 to 3,008,551
_RS13425
LRK54_RS13430: LRK54_RS13430 - flagellar basal-body rod protein FlgG, at 3,008,602 to 3,009,387
_RS13430
LRK54_RS13435: LRK54_RS13435 - flagellar basal body L-ring protein FlgH, at 3,009,399 to 3,010,079
_RS13435
Group
Condition
LRK54
_RS13415
LRK54
_RS13420
LRK54
_RS13425
LRK54
_RS13430
LRK54
_RS13435
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.8
-0.8
-2.2
-0.9
-0.8
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.4
-0.6
-2.9
-0.7
-0.3
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.4
-0.5
-1.4
-1.0
-0.3
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.2
-0.5
-0.6
-0.9
-0.5
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.3
-0.4
-1.0
-0.5
-0.4
stress
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM
+0.2
+0.3
-1.3
+0.5
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.7
+0.5
-0.4
+0.4
+0.9
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.3
+0.2
+1.6
+0.2
+0.6
carbon source
L-Glutamic 20 mM
+0.4
+0.5
+0.7
+0.5
+0.5
carbon source
D-Glucose 20 mM
+0.5
+0.5
+0.4
+0.6
+0.6
carbon source
D-Maltose 20 mM
+0.5
+0.4
+0.8
+0.5
+0.4
pH
R2A pH5
+0.3
+0.4
+0.9
+0.6
+0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.7
+0.6
+0.2
+0.5
+0.6
pH
R2A pH6
+0.4
+0.4
+0.7
+0.8
+0.4
pH
R2A pH7
+0.4
+0.4
+0.6
+0.7
+0.5
carbon source
Gly-Glu 20 mM
+0.3
+0.5
+0.4
+0.7
+0.8
pH
R2A pH6
+0.2
+0.4
+1.0
+0.7
+0.5
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.5
+0.6
+0.6
+0.6
+0.5
stress
R2A with Magnesium sulfate 3.90625 mM
+0.3
+0.7
+0.7
+0.6
+0.6
stress
R2A with m-arsenite 0.078125 mM
+0.4
+0.4
+0.9
+0.9
+0.3
carbon source
casaminos 2 mg/mL
+0.5
+0.7
+0.8
+0.4
+0.6
carbon source
L-Glutamic 20 mM
+0.6
+0.7
+0.7
+0.6
+0.5
stress
R2A with Magnesium sulfate 3.90625 mM
+0.3
+0.7
+0.8
+0.7
+0.7
carbon source
Gly-Glu 20 mM
+0.4
+0.8
+0.7
+0.6
+0.7
carbon source
casaminos 2 mg/mL
+0.7
+0.7
+1.0
+0.6
+0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.8
+1.0
+0.6
+0.9
+1.2
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.6
+1.0
+1.2
+1.0
+0.7
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.9
+1.1
+1.4
+0.9
+1.5
carbon source
D-Trehalose 20 mM
+1.1
+1.2
+1.1
+1.4
+1.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+1.0
+1.5
+1.4
+1.6
+1.3
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