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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS13355 and LRK54_RS13360 overlap by 4 nucleotides
LRK54_RS13360 and LRK54_RS13365 are separated by 166 nucleotides
LRK54_RS13365 and LRK54_RS13370 overlap by 1 nucleotides
LRK54_RS13370 and LRK54_RS13375 are separated by 28 nucleotides
LRK54_RS13355: LRK54_RS13355 - YfhL family 4Fe-4S dicluster ferredoxin, at 2,995,226 to 2,995,486
_RS13355
LRK54_RS13360: LRK54_RS13360 - gamma-glutamyltransferase, at 2,995,483 to 2,997,207
_RS13360
LRK54_RS13365: LRK54_RS13365 - MBL fold metallo-hydrolase, at 2,997,374 to 2,998,246
_RS13365
LRK54_RS13370: LRK54_RS13370 - hypothetical protein, at 2,998,246 to 2,999,280
_RS13370
LRK54_RS13375: LRK54_RS13375 - HDOD domain-containing protein, at 2,999,309 to 3,000,592
_RS13375
Group
Condition
LRK54
_RS13355
LRK54
_RS13360
LRK54
_RS13365
LRK54
_RS13370
LRK54
_RS13375
stress
R2A_PIPES with Cadmium chloride 16 uM
-0.7
-1.7
-0.6
-0.1
-0.3
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.3
-0.3
-0.4
-0.4
-0.7
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.6
-1.3
-0.1
-0.0
+0.0
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.4
-0.2
-0.3
-0.5
-0.6
stress
R2A with m-arsenite 0.078125 mM
-1.1
-1.1
+0.3
+0.0
-0.1
stress
R2A_PIPES with Cadmium chloride 16 uM
-0.5
-1.4
+0.1
+0.0
-0.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-1.5
-0.2
+0.4
-0.5
-0.0
stress
R2A with m-arsenite 0.078125 mM
-0.9
-0.8
-0.0
-0.0
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.6
-0.1
-0.7
-0.3
-0.2
stress
R2A with nitrite 50 mM
-0.3
-1.2
-0.1
+0.0
-0.0
stress
R2A with Zinc chloride 0.625 mM
-1.4
-0.4
+0.1
-0.1
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.4
-0.7
-0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.2
-1.4
+0.1
+0.1
-0.1
stress
R2A with arsenate 15.625 mM
-0.8
-0.2
-0.1
-0.2
-0.0
stress
R2A with m-arsenite 0.0390625 mM
-1.0
-0.5
+0.0
+0.2
-0.1
stress
R2A with Gallium(III)chloride 0.78125 mM
-0.8
-0.5
-0.1
-0.1
+0.1
stress
R2A with arsenate 31.25 mM
-1.1
-0.1
+0.0
+0.1
-0.1
stress
R2A with Gallium(III)chloride 0.78125 mM
-0.9
-0.3
-0.2
-0.1
+0.2
stress
R2A with Zinc chloride 0.625 mM
-0.8
-0.4
+0.3
-0.2
+0.1
stress
R2A with nitrite 25 mM
-0.7
-0.7
+0.2
+0.1
+0.0
stress
R2A with nitrite 50 mM
-0.3
-1.0
+0.1
+0.1
+0.1
stress
R2A with Cobalt chloride 0.15625 mM
+0.2
-0.1
-0.6
-0.5
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.3
-0.1
-0.6
+0.3
+0.1
no phage control
No phage control
-1.0
+0.0
+0.1
+0.3
+0.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-1.0
-0.1
+0.4
+0.2
+0.2
carbon source
D-Glucose-6-Phosphate 20 mM
+0.3
+0.1
-0.7
+0.2
+0.0
stress
R2A with chromate 0.0048828125 mM
+0.8
+0.0
-0.1
-0.3
+0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.4
-0.1
+0.2
-0.4
+0.6
stress
R2A with silver chloride 1 mM
-0.2
+0.7
+0.3
+0.1
+0.3
stress
R2A with silver chloride 1 mM
+0.8
+0.9
-0.0
-0.2
+0.3
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