Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13355 and LRK54_RS13360 overlap by 4 nucleotidesLRK54_RS13360 and LRK54_RS13365 are separated by 166 nucleotidesLRK54_RS13365 and LRK54_RS13370 overlap by 1 nucleotidesLRK54_RS13370 and LRK54_RS13375 are separated by 28 nucleotides LRK54_RS13355: LRK54_RS13355 - YfhL family 4Fe-4S dicluster ferredoxin, at 2,995,226 to 2,995,486 _RS13355 LRK54_RS13360: LRK54_RS13360 - gamma-glutamyltransferase, at 2,995,483 to 2,997,207 _RS13360 LRK54_RS13365: LRK54_RS13365 - MBL fold metallo-hydrolase, at 2,997,374 to 2,998,246 _RS13365 LRK54_RS13370: LRK54_RS13370 - hypothetical protein, at 2,998,246 to 2,999,280 _RS13370 LRK54_RS13375: LRK54_RS13375 - HDOD domain-containing protein, at 2,999,309 to 3,000,592 _RS13375
Group Condition LRK54_RS13355 LRK54_RS13360 LRK54_RS13365 LRK54_RS13370 LRK54_RS13375
stress R2A_PIPES with Cadmium chloride 16 uM -0.7 -1.7 -0.6 -0.1 -0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.3 -0.3 -0.4 -0.4 -0.7
stress R2A_PIPES with Cobalt chloride 256 uM -0.6 -1.3 -0.1 -0.0 +0.0
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.4 -0.2 -0.3 -0.5 -0.6
stress R2A with m-arsenite 0.078125 mM -1.1 -1.1 +0.3 +0.0 -0.1
stress R2A_PIPES with Cadmium chloride 16 uM -0.5 -1.4 +0.1 +0.0 -0.0
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -1.5 -0.2 +0.4 -0.5 -0.0
stress R2A with m-arsenite 0.078125 mM -0.9 -0.8 -0.0 -0.0 +0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.6 -0.1 -0.7 -0.3 -0.2
stress R2A with nitrite 50 mM -0.3 -1.2 -0.1 +0.0 -0.0
stress R2A with Zinc chloride 0.625 mM -1.4 -0.4 +0.1 -0.1 +0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.4 -0.4 -0.7 -0.1 -0.1
stress R2A_PIPES with Cobalt chloride 256 uM -0.2 -1.4 +0.1 +0.1 -0.1
stress R2A with arsenate 15.625 mM -0.8 -0.2 -0.1 -0.2 -0.0
stress R2A with m-arsenite 0.0390625 mM -1.0 -0.5 +0.0 +0.2 -0.1
stress R2A with Gallium(III)chloride 0.78125 mM -0.8 -0.5 -0.1 -0.1 +0.1
stress R2A with arsenate 31.25 mM -1.1 -0.1 +0.0 +0.1 -0.1
stress R2A with Gallium(III)chloride 0.78125 mM -0.9 -0.3 -0.2 -0.1 +0.2
stress R2A with Zinc chloride 0.625 mM -0.8 -0.4 +0.3 -0.2 +0.1
stress R2A with nitrite 25 mM -0.7 -0.7 +0.2 +0.1 +0.0
stress R2A with nitrite 50 mM -0.3 -1.0 +0.1 +0.1 +0.1
stress R2A with Cobalt chloride 0.15625 mM +0.2 -0.1 -0.6 -0.5 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.1 -0.6 +0.3 +0.1
no phage control No phage control -1.0 +0.0 +0.1 +0.3 +0.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -1.0 -0.1 +0.4 +0.2 +0.2
carbon source D-Glucose-6-Phosphate 20 mM +0.3 +0.1 -0.7 +0.2 +0.0
stress R2A with chromate 0.0048828125 mM +0.8 +0.0 -0.1 -0.3 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.4 -0.1 +0.2 -0.4 +0.6
stress R2A with silver chloride 1 mM -0.2 +0.7 +0.3 +0.1 +0.3
stress R2A with silver chloride 1 mM +0.8 +0.9 -0.0 -0.2 +0.3
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