Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS13310 and LRK54_RS13315 are separated by 423 nucleotidesLRK54_RS13315 and LRK54_RS13320 are separated by 81 nucleotidesLRK54_RS13320 and LRK54_RS13325 are separated by 53 nucleotidesLRK54_RS13325 and LRK54_RS13330 overlap by 4 nucleotides LRK54_RS13310: LRK54_RS13310 - PEP-CTERM sorting domain-containing protein, at 2,988,425 to 2,989,165 _RS13310 LRK54_RS13315: LRK54_RS13315 - tRNA-Phe, at 2,989,589 to 2,989,664 _RS13315 LRK54_RS13320: LRK54_RS13320 - oxidative damage protection protein, at 2,989,746 to 2,990,024 _RS13320 LRK54_RS13325: LRK54_RS13325 - A/G-specific adenine glycosylase, at 2,990,078 to 2,991,139 _RS13325 LRK54_RS13330: LRK54_RS13330 - hypothetical protein, at 2,991,136 to 2,992,203 _RS13330
Group Condition LRK54_RS13310 LRK54_RS13315 LRK54_RS13320 LRK54_RS13325 LRK54_RS13330
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.1 N.D. -0.2 -0.5 -1.3
no stress control no stress control -0.1 N.D. -0.4 -0.2 -0.7
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 N.D. -0.2 +0.3 -1.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 N.D. -0.6 +0.1 -0.8
carbon source D-Glucose-6-Phosphate 20 mM -0.1 N.D. +0.1 -0.2 -1.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.1 N.D. -1.3 +0.2 -0.3
carbon source D-Glucose-6-Phosphate 20 mM +0.2 N.D. -0.3 +0.2 -1.3
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.3 N.D. +0.4 -0.4 -0.7
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.1 N.D. -1.2 -0.2 +0.5
stress R2A with Zinc chloride 0.625 mM +0.0 N.D. -1.4 +0.1 +0.5
stress R2A with Zinc chloride 0.625 mM -0.0 N.D. -1.0 -0.1 +0.4
carbon source a-Cyclodextrin 20 mM +0.1 N.D. +0.4 -0.0 -0.8
r2a_control R2A control -0.1 N.D. -0.5 -0.2 +0.6
stress R2A with Cesium chloride 3.90625 mM -0.1 N.D. -0.5 -0.1 +0.7
r2a_control R2A control -0.1 N.D. -0.3 -0.3 +0.7
stress R2A with chromate 0.0048828125 mM -0.0 N.D. +0.1 +0.7 -0.7
stress R2A with Nickel (II) chloride 0.3125 mM +0.0 N.D. -0.6 -0.1 +0.8
stress R2A with m-arsenite 0.078125 mM +0.0 N.D. -0.7 +0.1 +0.7
stress R2A with Nickel (II) chloride 0.3125 mM -0.1 N.D. -0.3 +0.2 +1.0
stress R2A with silver chloride 1 mM -0.1 N.D. +0.3 -0.1 +1.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.2 N.D. -0.1 -0.1 +1.5
stress R2A with Calcium chloride 250 mM +0.0 N.D. -0.1 -0.0 +1.3
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM -0.1 N.D. +0.4 +0.0 +1.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.1 N.D. +0.0 +0.2 +1.4
stress R2A with Aluminum chloride 3.125 mM +0.1 N.D. +0.8 -0.1 +0.9
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.1 N.D. +0.5 +0.1 +1.2
stress R2A with Cobalt chloride 0.15625 mM +0.0 N.D. +1.5 +0.3 +0.2
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.1 N.D. +0.8 +0.0 +1.1
stress R2A with Cobalt chloride 0.15625 mM -0.2 N.D. +1.8 +0.5 +0.2
stress R2A with Aluminum chloride 3.125 mM +0.0 N.D. +1.0 +0.0 +2.2
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