Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS12645 and LRK54_RS12650 are separated by 132 nucleotidesLRK54_RS12650 and LRK54_RS12655 are separated by 103 nucleotidesLRK54_RS12655 and LRK54_RS12660 are separated by 104 nucleotidesLRK54_RS12660 and LRK54_RS12665 are separated by 212 nucleotides LRK54_RS12645: LRK54_RS12645 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 2,823,401 to 2,823,514 _RS12645 LRK54_RS12650: LRK54_RS12650 - DUF1801 domain-containing protein, at 2,823,647 to 2,824,057 _RS12650 LRK54_RS12655: LRK54_RS12655 - M13 family metallopeptidase, at 2,824,161 to 2,826,212 _RS12655 LRK54_RS12660: LRK54_RS12660 - translocation/assembly module TamB domain-containing protein, at 2,826,317 to 2,830,075 _RS12660 LRK54_RS12665: LRK54_RS12665 - autotransporter assembly complex protein TamA, at 2,830,288 to 2,832,060 _RS12665
Group Condition LRK54_RS12645 LRK54_RS12650 LRK54_RS12655 LRK54_RS12660 LRK54_RS12665
carbon source acetate 20 mM N.D. -0.0 +0.0 -1.6 -1.6
carbon source acetate 20 mM N.D. +0.1 -0.0 -1.2 -1.8
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. -0.2 +0.0 -1.6 -0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.1 -0.2 -1.8 -0.4
stress R2A with Chloride 250 mM N.D. +0.1 +0.1 -1.3 -1.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. +0.3 +0.1 -1.3 -1.1
stress R2A with Calcium chloride 250 mM N.D. -0.1 +0.0 -1.0 -0.9
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 N.D. -0.9 -0.1 -0.5 -0.4
stress R2A with Calcium chloride 125 mM N.D. -0.2 +0.2 -1.1 -0.7
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x N.D. +0.1 +0.0 -1.0 -0.9
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. -0.2 -0.0 -1.0 -0.4
carbon source D-Raffinose 20 mM N.D. +0.1 -0.0 -0.8 -0.9
stress R2A_PIPES with Cobalt chloride 256 uM N.D. -0.0 +0.0 -0.9 -0.8
biofilm assay; biofilm sample biofilm; Day1; NLDM; N.D. +0.0 +0.2 -0.9 -0.9
biofilm assay; biofilm sample biofilm; Day2; NLDM; N.D. +0.1 -0.0 -0.7 -0.9
carbon source D-Glucose-6-Phosphate 20 mM N.D. +0.5 -0.1 -1.0 -0.9
carbon source D-Glucose-6-Phosphate 20 mM N.D. +0.1 -0.1 -0.6 -1.0
stress R2A with Chloride 250 mM N.D. +0.1 +0.2 -0.9 -0.8
stress R2A with SpecU metal mix 1 X N.D. +0.1 +0.0 -0.7 -0.9
stress R2A with sodium bromide 250 mM N.D. +0.0 +0.1 -0.8 -0.7
stress R2A with SpecU metal mix 1 X N.D. +0.3 +0.0 -0.7 -0.9
no stress control no stress control N.D. +0.3 -0.0 -0.8 -0.7
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. +0.2 +0.1 -0.7 -0.9
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x N.D. +0.2 +0.1 -0.9 -0.8
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM N.D. +0.2 +0.1 -0.6 -0.9
carbon source D-Maltose 20 mM N.D. +0.3 +0.0 -0.8 -0.7
stress R2A with nitrate 125 mM N.D. +0.3 +0.0 -0.7 -0.7
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM N.D. +0.3 +0.0 -0.9 -0.4
stress R2A with Zinc chloride 0.625 mM N.D. -0.4 +0.2 +0.8 +0.7
stress R2A with Cobalt chloride 0.15625 mM N.D. +0.3 +0.1 +0.6 +0.7
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