Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS11935 and LRK54_RS11940 are separated by 10 nucleotidesLRK54_RS11940 and LRK54_RS11945 are separated by 10 nucleotidesLRK54_RS11945 and LRK54_RS11950 are separated by 88 nucleotidesLRK54_RS11950 and LRK54_RS11955 are separated by 179 nucleotides LRK54_RS11935: LRK54_RS11935 - ABC transporter ATP-binding protein, at 2,646,451 to 2,647,137 _RS11935 LRK54_RS11940: LRK54_RS11940 - ABC transporter permease, at 2,647,148 to 2,648,314 _RS11940 LRK54_RS11945: LRK54_RS11945 - ABC transporter permease, at 2,648,325 to 2,649,644 _RS11945 LRK54_RS11950: LRK54_RS11950 - TIGR00366 family protein, at 2,649,733 to 2,651,121 _RS11950 LRK54_RS11955: LRK54_RS11955 - drug/metabolite exporter YedA, at 2,651,301 to 2,652,227 _RS11955
Group Condition LRK54_RS11935 LRK54_RS11940 LRK54_RS11945 LRK54_RS11950 LRK54_RS11955
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.9 +0.1 -0.2 -0.3 -1.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -2.2 +0.3 -0.2 -0.1 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.4 -0.2 -0.1 -0.3 -0.2
phage SA-T2 -1.0 -0.1 +0.1 -0.0 -0.1
stress R2A_PIPES with Cadmium chloride 16 uM -0.6 -0.2 -0.2 -0.0 -0.1
phage 2A-T2 -0.8 -0.2 +0.1 -0.2 +0.1
phage 1E-T1 -0.1 -0.7 -0.1 -0.1 +0.1
phage 4E-T2 -0.7 -0.2 -0.0 -0.0 +0.1
phage 1E-T2 -0.6 -0.3 +0.1 +0.0 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.8 +0.1 -0.1 -0.1 +0.0
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM -0.7 +0.1 +0.0 +0.1 -0.2
stress R2A with Cobalt chloride 0.15625 mM -0.2 +0.2 -0.4 +0.1 -0.3
phage 4B-T2 -0.9 +0.3 +0.0 +0.2 -0.0
stress R2A with Selective_ion_mix_1 1 X +0.3 -0.4 -0.3 +0.0 +0.1
stress R2A with chromate 0.0048828125 mM -0.2 +0.6 -0.1 -0.1 -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.3 +0.1 -0.5 +0.1 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM +0.9 +0.0 -0.5 +0.1 -0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.4 +0.3 +0.1 +0.0 +0.1
stress R2A with Aluminum chloride 3.125 mM -0.2 +0.2 +0.4 +0.2 -0.3
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.3 -0.3 +0.4 -0.0 -0.1
carbon source a-Cyclodextrin 20 mM +1.0 -0.2 +0.2 -0.0 -0.4
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.8 +0.2 -0.5 +0.1 +0.1
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.6 +0.1 -0.3 +0.4 -0.1
carbon source a-Cyclodextrin 20 mM +0.8 +0.1 +0.0 +0.1 -0.2
r2a_control R2A control +0.7 -0.1 +0.1 +0.0 +0.1
carbon source D-Glucose (C); 20C +0.7 +0.1 +0.2 -0.0 +0.0
carbon source D-Glucose (C); 30C +0.7 +0.1 +0.3 -0.1 +0.1
stress R2A with Selective_ion_mix_1 1 X +0.4 +0.1 +0.2 +0.2 +0.2
stress R2A with Selective_ion_mix_1 1 X +0.3 +0.4 +0.3 +0.0 +0.2
phage phage 31.1 +1.1 +0.1 +0.3 -0.2 +0.1
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