Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS11850 and LRK54_RS11855 are separated by 55 nucleotidesLRK54_RS11855 and LRK54_RS11860 are separated by 184 nucleotidesLRK54_RS11860 and LRK54_RS11865 overlap by 4 nucleotidesLRK54_RS11865 and LRK54_RS11870 overlap by 4 nucleotides LRK54_RS11850: LRK54_RS11850 - pilus assembly protein PilP, at 2,626,064 to 2,626,606 _RS11850 LRK54_RS11855: LRK54_RS11855 - type IV pilus secretin PilQ, at 2,626,662 to 2,628,806 _RS11855 LRK54_RS11860: LRK54_RS11860 - MoxR family ATPase, at 2,628,991 to 2,629,986 _RS11860 LRK54_RS11865: LRK54_RS11865 - DUF58 domain-containing protein, at 2,629,983 to 2,630,918 _RS11865 LRK54_RS11870: LRK54_RS11870 - DUF4381 domain-containing protein, at 2,630,915 to 2,631,442 _RS11870
Group Condition LRK54_RS11850 LRK54_RS11855 LRK54_RS11860 LRK54_RS11865 LRK54_RS11870
stress R2A with Aluminum chloride 3.125 mM +1.6 +1.9 -0.2 -0.2 -0.2
r2a_control R2A control +1.1 +1.1 +0.2 +0.5 +0.4
stress R2A with Magnesium sulfate 3.90625 mM +1.2 +1.2 +0.3 +0.3 +0.3
stress R2A with lead(II) chloride 0.625 mM +1.1 +1.1 +0.3 +0.3 +0.4
carbon source D-Glucose 20 mM +1.4 +1.4 +0.2 +0.2 +0.1
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +1.3 +1.3 +0.3 +0.3 +0.3
carbon source D-Maltose 20 mM +1.4 +1.5 +0.2 +0.2 +0.2
r2a_control R2A control +1.2 +1.2 +0.3 +0.4 +0.3
r2a_control R2A control +1.1 +1.1 +0.4 +0.5 +0.3
stress R2A with m-arsenite 0.078125 mM +0.8 +0.8 +0.7 +0.6 +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.5 +1.5 +0.3 -0.1 +0.3
carbon source Gly-Glu 20 mM +1.7 +1.6 +0.1 +0.1 +0.1
r2a_control R2A control +1.2 +1.2 +0.2 +0.6 +0.4
carbon source Gly-Glu 20 mM +1.4 +1.3 +0.4 +0.3 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +1.1 +0.8 +0.9 +0.2 +0.6
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +1.6 +1.5 +0.2 +0.3 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM +1.0 +0.9 +0.8 +0.7 +0.4
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +1.8 +1.8 +0.1 +0.3 +0.0
stress R2A with m-arsenite 0.078125 mM +0.9 +0.7 +0.8 +0.7 +0.8
carbon source acetate 20 mM +2.0 +2.0 +0.1 -0.1 +0.2
stress R2A with silver chloride 1 mM +1.2 +1.2 +0.5 +0.9 +0.7
stress R2A with silver chloride 1 mM +1.1 +1.2 +0.9 +0.6 +0.7
carbon source D-Trehalose 20 mM +1.8 +1.8 +0.3 +0.4 +0.3
stress R2A with Manganese (II) chloride tetrahydrate 2.5 mM +1.7 +1.7 +0.5 +0.3 +0.5
stress R2A with Ferric chloride 1.5625 mM +2.1 +2.1 +0.1 +0.2 +0.2
stress R2A with ammonium iron(II) sulfate 2.5 mM +2.3 +2.3 +0.2 +0.1 +0.0
carbon source acetate 20 mM +2.2 +2.2 +0.5 +0.2 +0.2
stress R2A with bismuth(III) chloride 0.03125 mM +1.1 +0.9 +0.9 +1.2 +1.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +2.8 +2.7 -0.0 +0.1 +0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +2.8 +2.8 +0.1 +0.3 +0.2
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