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Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS11845 and LRK54_RS11850 are separated by 46 nucleotides
LRK54_RS11850 and LRK54_RS11855 are separated by 55 nucleotides
LRK54_RS11855 and LRK54_RS11860 are separated by 184 nucleotides
LRK54_RS11860 and LRK54_RS11865 overlap by 4 nucleotides
LRK54_RS11845: LRK54_RS11845 - type 4a pilus biogenesis protein PilO, at 2,625,412 to 2,626,017
_RS11845
LRK54_RS11850: LRK54_RS11850 - pilus assembly protein PilP, at 2,626,064 to 2,626,606
_RS11850
LRK54_RS11855: LRK54_RS11855 - type IV pilus secretin PilQ, at 2,626,662 to 2,628,806
_RS11855
LRK54_RS11860: LRK54_RS11860 - MoxR family ATPase, at 2,628,991 to 2,629,986
_RS11860
LRK54_RS11865: LRK54_RS11865 - DUF58 domain-containing protein, at 2,629,983 to 2,630,918
_RS11865
Group
Condition
LRK54
_RS11845
LRK54
_RS11850
LRK54
_RS11855
LRK54
_RS11860
LRK54
_RS11865
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+1.4
+1.4
+1.3
+0.1
-0.1
stress
R2A with lead(II) chloride 0.625 mM
+1.1
+1.1
+1.1
+0.4
+0.3
stress
R2A with Cesium chloride 3.90625 mM
+1.2
+1.2
+1.2
+0.2
+0.3
stress
R2A with m-arsenite 0.078125 mM
+0.9
+0.9
+0.7
+0.8
+0.7
stress
R2A with Magnesium sulfate 3.90625 mM
+1.2
+1.2
+1.2
+0.3
+0.3
r2a_control
R2A control
+1.1
+1.1
+1.1
+0.4
+0.5
r2a_control
R2A control
+1.2
+1.2
+1.2
+0.3
+0.4
stress
R2A with Uranyl acetate 2.5 mM
+1.4
+1.3
+1.3
+0.2
+0.1
stress
R2A with Manganese (II) chloride tetrahydrate 2.5 mM
+1.3
+1.3
+1.3
+0.3
+0.3
r2a_control
R2A control
+1.1
+1.2
+1.2
+0.2
+0.6
carbon source
D-Glucose 20 mM
+1.5
+1.4
+1.4
+0.2
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+1.4
+1.5
+1.5
+0.3
-0.1
carbon source
D-Maltose 20 mM
+1.5
+1.4
+1.5
+0.2
+0.2
stress
R2A with Nickel (II) chloride 0.3125 mM
+1.3
+1.0
+0.9
+0.8
+0.7
carbon source
Gly-Glu 20 mM
+1.4
+1.4
+1.3
+0.4
+0.3
stress
R2A with Aluminum chloride 3.125 mM
+1.6
+1.6
+1.9
-0.2
-0.2
stress
R2A with silver chloride 1 mM
+1.2
+1.2
+1.2
+0.5
+0.9
stress
R2A with silver chloride 1 mM
+1.3
+1.1
+1.2
+0.9
+0.6
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+1.5
+1.6
+1.5
+0.2
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+1.1
+1.1
+0.9
+0.9
+1.2
carbon source
Gly-Glu 20 mM
+1.8
+1.7
+1.6
+0.1
+0.1
stress
R2A with Manganese (II) chloride tetrahydrate 2.5 mM
+1.7
+1.7
+1.7
+0.5
+0.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+1.9
+1.8
+1.8
+0.1
+0.3
carbon source
acetate 20 mM
+2.1
+2.0
+2.0
+0.1
-0.1
carbon source
D-Trehalose 20 mM
+1.8
+1.8
+1.8
+0.3
+0.4
stress
R2A with Ferric chloride 1.5625 mM
+2.2
+2.1
+2.1
+0.1
+0.2
stress
R2A with ammonium iron(II) sulfate 2.5 mM
+2.4
+2.3
+2.3
+0.2
+0.1
carbon source
acetate 20 mM
+2.3
+2.2
+2.2
+0.5
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+2.8
+2.8
+2.7
-0.0
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+3.0
+2.8
+2.8
+0.1
+0.3
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