Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS11575 and LRK54_RS11580 are separated by 3 nucleotidesLRK54_RS11580 and LRK54_RS11585 are separated by 93 nucleotidesLRK54_RS11585 and LRK54_RS11590 are separated by 288 nucleotidesLRK54_RS11590 and LRK54_RS11595 are separated by 82 nucleotides LRK54_RS11575: LRK54_RS11575 - haloacid dehalogenase-like hydrolase, at 2,571,413 to 2,572,105 _RS11575 LRK54_RS11580: LRK54_RS11580 - sulfite exporter TauE/SafE family protein, at 2,572,109 to 2,572,852 _RS11580 LRK54_RS11585: LRK54_RS11585 - cAMP-activated global transcriptional regulator CRP, at 2,572,946 to 2,573,647 _RS11585 LRK54_RS11590: LRK54_RS11590 - adenosylmethionine decarboxylase, at 2,573,936 to 2,574,721 _RS11590 LRK54_RS11595: LRK54_RS11595 - 2OG-Fe(II) oxygenase, at 2,574,804 to 2,575,529 _RS11595
Group Condition LRK54_RS11575 LRK54_RS11580 LRK54_RS11585 LRK54_RS11590 LRK54_RS11595
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.2 -0.2 -3.8 N.D. -0.2
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.4 -0.3 -3.7 N.D. -0.3
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.0 -0.1 -3.6 N.D. -0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; -0.3 -0.3 -2.6 N.D. -0.3
biofilm assay; planktonic sample planktonic; Day2; NLDM; -0.2 +0.1 -3.0 N.D. -0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; -0.1 +0.1 -2.8 N.D. -0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.7 -1.6 -1.7 N.D. -0.1
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.3 +0.1 -1.9 N.D. -0.1
stress R2A with lead(II) chloride 0.625 mM -0.0 -0.0 -2.1 N.D. +0.3
stress R2A with lead(II) chloride 0.625 mM -0.2 +0.1 -1.7 N.D. +0.2
stress R2A with chromate 0.0048828125 mM +0.2 +0.3 -1.2 N.D. -0.8
biofilm assay; planktonic sample planktonic; Day1; NLDM; +0.1 +0.2 -1.6 N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.7 +1.0 N.D. +0.1
carbon source acetate 20 mM -0.3 -0.8 +1.8 N.D. +0.1
carbon source D-Trehalose 20 mM -0.1 -0.2 +1.7 N.D. -0.1
carbon source NAG 20 mM -0.3 -0.3 +1.9 N.D. +0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 +0.1 +1.6 N.D. -0.2
stress R2A with Calcium chloride 125 mM -0.2 -0.1 +1.5 N.D. +0.2
carbon source D-Glucose 20 mM -0.2 -0.2 +1.8 N.D. +0.1
carbon source L-Glutamic 20 mM -0.1 -0.3 +1.7 N.D. +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.4 -0.4 +2.3 N.D. +0.2
carbon source D-Maltose 20 mM -0.2 -0.5 +2.3 N.D. +0.0
carbon source acetate 20 mM +0.2 -0.5 +2.0 N.D. +0.1
stress R2A with Calcium chloride 250 mM -0.2 -0.1 +2.1 N.D. +0.3
carbon source D-Trehalose 20 mM -0.2 -0.1 +2.5 N.D. -0.0
stress R2A with Calcium chloride 125 mM +0.2 -0.1 +2.0 N.D. +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.0 +0.2 +2.7 N.D. -0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.1 +0.1 +2.4 N.D. -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.0 +0.1 +2.3 N.D. +0.3
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.2 -0.2 +3.1 N.D. +0.2
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