Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS11470 and LRK54_RS11475 overlap by 4 nucleotidesLRK54_RS11475 and LRK54_RS11480 overlap by 14 nucleotidesLRK54_RS11480 and LRK54_RS11485 overlap by 4 nucleotidesLRK54_RS11485 and LRK54_RS11490 are separated by 83 nucleotides LRK54_RS11470: LRK54_RS11470 - M15 family metallopeptidase, at 2,544,418 to 2,545,152 _RS11470 LRK54_RS11475: LRK54_RS11475 - serine hydrolase, at 2,545,149 to 2,546,828 _RS11475 LRK54_RS11480: LRK54_RS11480 - dipeptidase, at 2,546,815 to 2,548,026 _RS11480 LRK54_RS11485: LRK54_RS11485 - diaminopimelate decarboxylase, at 2,548,023 to 2,549,327 _RS11485 LRK54_RS11490: LRK54_RS11490 - TonB-dependent receptor, at 2,549,411 to 2,552,407 _RS11490
Group Condition LRK54_RS11470 LRK54_RS11475 LRK54_RS11480 LRK54_RS11485 LRK54_RS11490
stress R2A with chromate 0.0048828125 mM -1.5 -0.4 -0.1 -0.3 +0.0
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.9 -0.2 -0.7 -0.1 -0.2
stress R2A with chromate 0.0048828125 mM -0.7 -0.3 -0.3 -0.3 -0.1
stress R2A with Nickel (II) chloride 0.3125 mM -0.3 -0.3 -0.5 -0.3 +0.0
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.8 -0.3 -0.1 -0.1 -0.0
phage 1E-T1 -0.9 -0.1 -0.0 -0.1 -0.0
stress R2A with Selective_ion_mix_1 1 X -0.5 -0.1 -0.5 +0.0 -0.1
stress R2A with arsenate 31.25 mM -0.6 -0.2 -0.0 -0.3 -0.0
stress R2A with lithium chloride 15.625 mM -0.4 -0.2 -0.4 -0.1 +0.1
phage 1E-T2 -0.7 -0.2 +0.0 -0.2 +0.1
stress R2A with Selective_ion_mix_1 1 X -0.1 +0.1 -0.5 -0.3 -0.1
carbon source Gly-Glu 20 mM -0.1 +0.1 +0.2 -0.6 -0.4
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -1.3 -0.1 +0.4 +0.2 +0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -0.2 +0.3 -0.4 -0.1
stress R2A_PIPES with Nickel (II) chloride 424 uM +0.2 -0.5 +0.1 -0.2 -0.2
pH R2A pH5 -0.4 -0.1 -0.2 +0.2 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.7 -0.1 +0.2 +0.1 -0.1
carbon source Gly-Glu 20 mM -0.3 +0.1 +0.3 -0.3 -0.4
stress R2A with Nickel (II) chloride 0.3125 mM -0.2 +0.3 -0.4 -0.1 -0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.3 -0.3 -0.1 +0.4 -0.0
stress R2A with bismuth(III) chloride 0.03125 mM +0.3 -0.1 +0.3 -0.5 -0.1
stress R2A with Cobalt chloride 0.15625 mM +0.3 +0.2 -0.2 -0.4 -0.0
phage phage 31.1 +0.3 -0.2 +0.2 -0.2 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.7 +0.1 +0.6 +0.3 -0.1
stress R2A with Chloride 250 mM +0.3 -0.2 +0.3 +0.2 +0.1
no phage control No phage control +0.5 +0.3 +0.2 -0.2 -0.0
stress R2A with Selective_ion_mix_1 1 X +1.0 +0.2 +0.1 -0.1 -0.1
phage 2A-T2 +0.4 +0.0 +0.6 +0.1 +0.0
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.2 +0.2 +0.0 +0.5 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.4 +0.1 +0.6 +0.2 +0.1
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