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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS11470 and LRK54_RS11475 overlap by 4 nucleotides
LRK54_RS11475 and LRK54_RS11480 overlap by 14 nucleotides
LRK54_RS11480 and LRK54_RS11485 overlap by 4 nucleotides
LRK54_RS11485 and LRK54_RS11490 are separated by 83 nucleotides
LRK54_RS11470: LRK54_RS11470 - M15 family metallopeptidase, at 2,544,418 to 2,545,152
_RS11470
LRK54_RS11475: LRK54_RS11475 - serine hydrolase, at 2,545,149 to 2,546,828
_RS11475
LRK54_RS11480: LRK54_RS11480 - dipeptidase, at 2,546,815 to 2,548,026
_RS11480
LRK54_RS11485: LRK54_RS11485 - diaminopimelate decarboxylase, at 2,548,023 to 2,549,327
_RS11485
LRK54_RS11490: LRK54_RS11490 - TonB-dependent receptor, at 2,549,411 to 2,552,407
_RS11490
Group
Condition
LRK54
_RS11470
LRK54
_RS11475
LRK54
_RS11480
LRK54
_RS11485
LRK54
_RS11490
stress
R2A with chromate 0.0048828125 mM
-1.5
-0.4
-0.1
-0.3
+0.0
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.9
-0.2
-0.7
-0.1
-0.2
stress
R2A with chromate 0.0048828125 mM
-0.7
-0.3
-0.3
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.3
-0.3
-0.5
-0.3
+0.0
stress
R2A with ammonium iron(II) sulfate 2.5 mM
-0.8
-0.3
-0.1
-0.1
-0.0
phage
1E-T1
-0.9
-0.1
-0.0
-0.1
-0.0
stress
R2A with Selective_ion_mix_1 1 X
-0.5
-0.1
-0.5
+0.0
-0.1
stress
R2A with arsenate 31.25 mM
-0.6
-0.2
-0.0
-0.3
-0.0
stress
R2A with lithium chloride 15.625 mM
-0.4
-0.2
-0.4
-0.1
+0.1
phage
1E-T2
-0.7
-0.2
+0.0
-0.2
+0.1
stress
R2A with Selective_ion_mix_1 1 X
-0.1
+0.1
-0.5
-0.3
-0.1
carbon source
Gly-Glu 20 mM
-0.1
+0.1
+0.2
-0.6
-0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-1.3
-0.1
+0.4
+0.2
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.3
-0.2
+0.3
-0.4
-0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.2
-0.5
+0.1
-0.2
-0.2
pH
R2A pH5
-0.4
-0.1
-0.2
+0.2
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.7
-0.1
+0.2
+0.1
-0.1
carbon source
Gly-Glu 20 mM
-0.3
+0.1
+0.3
-0.3
-0.4
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.2
+0.3
-0.4
-0.1
-0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.3
-0.3
-0.1
+0.4
-0.0
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
-0.1
+0.3
-0.5
-0.1
stress
R2A with Cobalt chloride 0.15625 mM
+0.3
+0.2
-0.2
-0.4
-0.0
phage
phage 31.1
+0.3
-0.2
+0.2
-0.2
+0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.7
+0.1
+0.6
+0.3
-0.1
stress
R2A with Chloride 250 mM
+0.3
-0.2
+0.3
+0.2
+0.1
no phage control
No phage control
+0.5
+0.3
+0.2
-0.2
-0.0
stress
R2A with Selective_ion_mix_1 1 X
+1.0
+0.2
+0.1
-0.1
-0.1
phage
2A-T2
+0.4
+0.0
+0.6
+0.1
+0.0
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.2
+0.2
+0.0
+0.5
+0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.4
+0.1
+0.6
+0.2
+0.1
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LRK54_RS11480
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