Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS11315 and LRK54_RS11320 are separated by 113 nucleotidesLRK54_RS11320 and LRK54_RS11325 are separated by 57 nucleotidesLRK54_RS11325 and LRK54_RS11330 are separated by 112 nucleotidesLRK54_RS11330 and LRK54_RS11335 are separated by 145 nucleotides LRK54_RS11315: LRK54_RS11315 - sigma-70 family RNA polymerase sigma factor, at 2,510,248 to 2,510,826 _RS11315 LRK54_RS11320: LRK54_RS11320 - hypothetical protein, at 2,510,940 to 2,511,266 _RS11320 LRK54_RS11325: LRK54_RS11325 - trimeric intracellular cation channel family protein, at 2,511,324 to 2,511,950 _RS11325 LRK54_RS11330: LRK54_RS11330 - hypothetical protein, at 2,512,063 to 2,512,344 _RS11330 LRK54_RS11335: LRK54_RS11335 - DNA polymerase IV, at 2,512,490 to 2,513,593 _RS11335
Group Condition LRK54_RS11315 LRK54_RS11320 LRK54_RS11325 LRK54_RS11330 LRK54_RS11335
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.0 N.D. -0.2 -1.0 +0.1
phage phage 31.1 +0.1 N.D. -0.1 -0.8 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.0 N.D. +0.1 -0.7 -0.2
stress R2A with arsenate 31.25 mM +0.1 N.D. -0.5 -0.3 -0.0
carbon source Gly-Glu 20 mM -0.0 N.D. -0.9 +0.3 -0.1
carbon source Gly-Glu 20 mM +0.0 N.D. -0.9 +0.1 +0.1
phage SA-T2 -0.3 N.D. -0.1 -0.4 +0.3
carbon source D-Glucose (C); 30C +0.1 N.D. +0.1 -0.7 -0.0
stress R2A with Cobalt chloride 0.15625 mM +0.2 N.D. +0.2 -0.7 -0.0
stress R2A with ammonium iron(II) sulfate 2.5 mM -0.1 N.D. +0.3 -0.5 -0.1
carbon source D-Glucose (C); 20C +0.1 N.D. +0.2 -0.4 -0.2
stress R2A_PIPES with Zinc chloride 640 uM -0.1 N.D. +0.2 -0.4 +0.1
phage SA-T1 +0.1 N.D. +0.0 -0.6 +0.2
phage 4B-T2 -0.3 N.D. +0.2 -0.3 +0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 N.D. +0.3 -0.3 -0.3
phage 2F-T1 +0.0 N.D. +0.2 -0.5 +0.1
stress R2A with Nickel (II) chloride 0.3125 mM -0.1 N.D. +0.3 -0.6 +0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; +0.1 N.D. -0.3 +0.3 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.3 N.D. -0.1 -0.3 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 N.D. -0.3 +0.3 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.4 N.D. -0.2 -0.2 +0.4
phage 1A-T1 -0.3 N.D. +0.3 +0.3 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 N.D. -0.2 +0.5 -0.0
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.2 N.D. -0.1 +0.3 +0.5
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.1 N.D. -0.3 +0.7 +0.0
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.4 N.D. +0.1 +0.1 +0.3
stress R2A_PIPES with Aluminum chloride 1.125 mM +0.1 N.D. +0.4 +0.0 +0.4
phage 1E-T1 -0.0 N.D. +0.3 +0.3 +0.4
carbon source D-Glucose-6-Phosphate 20 mM -0.2 N.D. +0.4 +0.8 +0.0
phage 4B-T1 +0.3 N.D. +0.2 +0.4 +0.3
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