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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS10830 and LRK54_RS10835 overlap by 4 nucleotides
LRK54_RS10835 and LRK54_RS10840 are separated by 173 nucleotides
LRK54_RS10840 and LRK54_RS10845 are separated by 365 nucleotides
LRK54_RS10845 and LRK54_RS10850 are separated by 10 nucleotides
LRK54_RS10830: LRK54_RS10830 - ABC transporter permease, at 2,396,091 to 2,396,861
_RS10830
LRK54_RS10835: LRK54_RS10835 - ABC transporter ATP-binding protein, at 2,396,858 to 2,397,622
_RS10835
LRK54_RS10840: LRK54_RS10840 - fatty acid desaturase, at 2,397,796 to 2,398,989
_RS10840
LRK54_RS10845: LRK54_RS10845 - 50S ribosomal protein L33, at 2,399,355 to 2,399,522
_RS10845
LRK54_RS10850: LRK54_RS10850 - 50S ribosomal protein L28, at 2,399,533 to 2,399,769
_RS10850
Group
Condition
LRK54
_RS10830
LRK54
_RS10835
LRK54
_RS10840
LRK54
_RS10845
LRK54
_RS10850
stress
R2A with Cesium chloride 3.90625 mM
+0.4
N.D.
N.D.
-2.8
N.D.
stress
R2A with Cesium chloride 3.90625 mM
+0.4
N.D.
N.D.
-2.4
N.D.
carbon source
acetate 20 mM
-0.0
N.D.
N.D.
-1.3
N.D.
carbon source
D-Glucose-6-Phosphate 20 mM
+0.3
N.D.
N.D.
-1.5
N.D.
stress
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM
-0.0
N.D.
N.D.
-1.2
N.D.
no stress control
no stress control
+0.1
N.D.
N.D.
-1.2
N.D.
carbon source
Gly-Glu 20 mM
+0.1
N.D.
N.D.
-1.1
N.D.
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+0.2
N.D.
N.D.
-1.0
N.D.
carbon source
D-Raffinose 20 mM
+0.2
N.D.
N.D.
-0.9
N.D.
carbon source
D-Glucose-6-Phosphate 20 mM
+0.4
N.D.
N.D.
-0.9
N.D.
no stress control
no stress control
+0.6
N.D.
N.D.
-0.8
N.D.
r2a_control
R2A control
-0.4
N.D.
N.D.
+0.7
N.D.
carbon source
a-Cyclodextrin 20 mM
+1.2
N.D.
N.D.
-0.8
N.D.
carbon source
a-Cyclodextrin 20 mM
+1.1
N.D.
N.D.
-0.2
N.D.
stress
R2A with SpecU metal mix 1 X
-0.2
N.D.
N.D.
+1.0
N.D.
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-0.1
N.D.
N.D.
+1.1
N.D.
stress
R2A with Calcium chloride 125 mM
-0.1
N.D.
N.D.
+1.2
N.D.
stress
R2A with Chloride 250 mM
+0.1
N.D.
N.D.
+1.1
N.D.
stress
R2A with Calcium chloride 125 mM
+0.1
N.D.
N.D.
+1.1
N.D.
stress
R2A with sodium bromide 250 mM
+0.1
N.D.
N.D.
+1.1
N.D.
stress
R2A with Calcium chloride 250 mM
-0.3
N.D.
N.D.
+1.6
N.D.
stress
R2A with SpecU metal mix 1 X
-0.0
N.D.
N.D.
+1.3
N.D.
stress
R2A with sodium bromide 250 mM
+0.3
N.D.
N.D.
+1.0
N.D.
stress
R2A with lithium chloride 15.625 mM
+0.1
N.D.
N.D.
+1.3
N.D.
stress
R2A with Selective_ion_mix_1 1 X
+1.1
N.D.
N.D.
+0.3
N.D.
stress
R2A with Selective_ion_mix_1 1 X
+1.0
N.D.
N.D.
+0.5
N.D.
stress
R2A with lithium chloride 15.625 mM
+0.5
N.D.
N.D.
+1.1
N.D.
stress
R2A with Selective_ion_mix_1 1 X
+0.9
N.D.
N.D.
+0.8
N.D.
stress
R2A with Aluminum chloride 3.125 mM
+0.2
N.D.
N.D.
+1.7
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
+0.2
N.D.
N.D.
+1.8
N.D.
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