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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS10705 and LRK54_RS10710 are separated by 187 nucleotides
LRK54_RS10710 and LRK54_RS10715 are separated by 164 nucleotides
LRK54_RS10715 and LRK54_RS10720 are separated by 61 nucleotides
LRK54_RS10720 and LRK54_RS10725 overlap by 4 nucleotides
LRK54_RS10705: LRK54_RS10705 - alpha/beta hydrolase, at 2,367,357 to 2,368,301
_RS10705
LRK54_RS10710: LRK54_RS10710 - M1 family metallopeptidase, at 2,368,489 to 2,370,345
_RS10710
LRK54_RS10715: LRK54_RS10715 - EAL domain-containing protein, at 2,370,510 to 2,372,690
_RS10715
LRK54_RS10720: LRK54_RS10720 - DUF2269 domain-containing protein, at 2,372,752 to 2,373,231
_RS10720
LRK54_RS10725: LRK54_RS10725 - NAD-dependent epimerase/dehydratase family protein, at 2,373,228 to 2,374,520
_RS10725
Group
Condition
LRK54
_RS10705
LRK54
_RS10710
LRK54
_RS10715
LRK54
_RS10720
LRK54
_RS10725
stress
R2A with m-arsenite 0.078125 mM
-0.9
-0.2
-0.1
-0.0
-0.1
stress
R2A with m-arsenite 0.078125 mM
-1.0
-0.2
+0.1
+0.2
-0.2
stress
R2A with arsenate 31.25 mM
-0.4
-0.2
-0.2
-0.1
-0.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.4
+0.0
-0.1
-0.5
-0.0
stress
R2A with m-arsenite 0.0390625 mM
-0.7
-0.2
-0.1
-0.0
+0.0
stress
R2A with nitrate 125 mM
-0.7
-0.2
+0.0
-0.0
-0.1
stress
R2A with nitrite 50 mM
-1.0
-0.3
-0.0
+0.2
+0.1
stress
R2A with SpecU metal mix 1 X
-0.7
-0.2
-0.1
+0.1
+0.0
r2a_control
R2A control
-0.6
-0.2
-0.0
-0.2
+0.0
stress
R2A with nitrite 50 mM
-0.9
-0.4
+0.0
+0.2
+0.1
phage
phage 31.1
-0.4
+0.0
-0.3
-0.4
+0.0
stress
R2A with arsenate 31.25 mM
-0.6
-0.2
+0.0
+0.0
-0.2
stress
R2A with Selective_ion_mix_1 1 X
+0.2
-0.1
-0.2
-0.3
-0.4
stress
R2A with Magnesium sulfate 3.90625 mM
-0.6
-0.2
-0.0
-0.1
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.3
-0.2
-0.2
+0.2
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.4
-0.2
+0.1
-0.3
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.8
-0.2
-0.2
+0.4
+0.1
pH
R2A pH6
-0.5
-0.2
+0.2
-0.1
+0.0
stress
R2A with nitrite 25 mM
-0.7
-0.2
-0.0
+0.3
-0.0
stress
R2A with Chloride 250 mM
-0.7
-0.3
+0.0
+0.2
+0.0
phage
2A-T2
+0.1
+0.2
-0.2
-0.4
-0.3
stress
R2A with nitrate 250 mM
-0.6
-0.2
-0.0
+0.2
-0.0
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.9
-0.1
+0.1
-0.0
+0.3
stress
R2A with Selective_ion_mix_1 1 X
+0.2
-0.1
-0.2
-0.6
+0.3
stress
R2A with Cesium chloride 3.90625 mM
-0.7
+0.4
+0.1
-0.2
-0.1
stress
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM
-0.3
-0.2
+0.1
+0.3
-0.1
stress
R2A with silver chloride 1 mM
-0.6
+0.1
+0.0
+0.3
+0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.4
+0.1
-0.1
-0.0
-0.4
carbon source
Gly-Glu 20 mM
-0.3
-0.1
+0.1
+0.4
+0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.4
+0.3
+0.1
+0.2
+0.1
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