Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS10685 and LRK54_RS10690 are separated by 83 nucleotidesLRK54_RS10690 and LRK54_RS10695 are separated by 114 nucleotidesLRK54_RS10695 and LRK54_RS10700 are separated by 18 nucleotidesLRK54_RS10700 and LRK54_RS10705 are separated by 139 nucleotides LRK54_RS10685: LRK54_RS10685 - aspartate/tyrosine/aromatic aminotransferase, at 2,363,523 to 2,364,725 _RS10685 LRK54_RS10690: LRK54_RS10690 - recombination-associated protein RdgC, at 2,364,809 to 2,365,726 _RS10690 LRK54_RS10695: LRK54_RS10695 - M48 family metallopeptidase, at 2,365,841 to 2,366,611 _RS10695 LRK54_RS10700: LRK54_RS10700 - sterol desaturase family protein, at 2,366,630 to 2,367,217 _RS10700 LRK54_RS10705: LRK54_RS10705 - alpha/beta hydrolase, at 2,367,357 to 2,368,301 _RS10705
Group Condition LRK54_RS10685 LRK54_RS10690 LRK54_RS10695 LRK54_RS10700 LRK54_RS10705
carbon source Gly-Glu 20 mM -2.4 N.D. +0.7 -0.2 -0.3
carbon source Gly-Glu 20 mM -2.1 N.D. +0.6 +0.2 -0.3
stress R2A with Nickel (II) chloride 0.3125 mM +0.2 N.D. -0.2 -0.4 -0.9
stress R2A with Nickel (II) chloride 0.3125 mM -0.5 N.D. +0.4 -0.3 -0.8
stress R2A with Chloride 250 mM -0.4 N.D. +0.2 -0.4 -0.6
stress R2A with nitrite 50 mM +0.1 N.D. +0.3 -0.2 -1.0
stress R2A with Chloride 250 mM -0.7 N.D. +0.6 -0.2 -0.7
stress R2A with m-arsenite 0.078125 mM +0.0 N.D. +0.2 -0.1 -0.9
stress R2A with nitrate 250 mM -0.4 N.D. +0.3 -0.2 -0.4
stress R2A with Zinc chloride 0.625 mM -0.3 N.D. +0.1 +0.1 -0.7
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.0 N.D. -0.5 +0.3 -0.4
carbon source L-Glutamic 20 mM -0.7 N.D. +0.3 -0.1 -0.1
stress R2A with m-arsenite 0.078125 mM -0.1 N.D. +0.4 +0.0 -1.0
stress R2A with nitrite 50 mM +0.1 N.D. +0.4 -0.2 -0.9
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM +0.1 N.D. +0.3 -0.4 -0.6
stress R2A with m-arsenite 0.0390625 mM -0.0 N.D. +0.4 -0.1 -0.7
stress R2A with nitrate 250 mM -0.3 N.D. +0.4 -0.0 -0.6
carbon source D-Glucose-6-Phosphate 20 mM -0.9 N.D. +0.4 +0.0 +0.0
stress R2A with Chloride 250 mM -0.2 N.D. +0.4 -0.2 -0.4
stress R2A with lithium chloride 15.625 mM +0.3 N.D. +0.3 -0.4 -0.6
stress R2A with silver chloride 1 mM -0.1 N.D. +0.5 -0.1 -0.6
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.6 N.D. +0.8 +0.1 -0.4
stress R2A with Magnesium sulfate 3.90625 mM +0.0 N.D. +0.6 -0.0 -0.7
stress R2A with Cesium chloride 3.90625 mM +0.2 N.D. +0.5 -0.0 -0.6
carbon source a-Cyclodextrin 20 mM -0.4 N.D. +0.5 +0.3 -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.2 N.D. +0.7 -0.1 -0.4
stress R2A with Cesium chloride 3.90625 mM +0.3 N.D. +0.8 -0.0 -0.7
stress R2A with bismuth(III) chloride 0.03125 mM +0.2 N.D. +0.5 +0.3 -0.5
carbon source a-Cyclodextrin 20 mM +0.1 N.D. +0.5 +0.4 -0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.5 N.D. +0.5 -0.0 +0.4
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