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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS10525 and LRK54_RS10530 are separated by 215 nucleotides
LRK54_RS10530 and LRK54_RS10535 are separated by 242 nucleotides
LRK54_RS10535 and LRK54_RS10540 are separated by 1 nucleotides
LRK54_RS10540 and LRK54_RS10545 are separated by 168 nucleotides
LRK54_RS10525: LRK54_RS10525 - glutathione S-transferase family protein, at 2,323,449 to 2,324,201
_RS10525
LRK54_RS10530: LRK54_RS10530 - S9 family peptidase, at 2,324,417 to 2,326,753
_RS10530
LRK54_RS10535: LRK54_RS10535 - M56 family metallopeptidase, at 2,326,996 to 2,328,882
_RS10535
LRK54_RS10540: LRK54_RS10540 - BlaI/MecI/CopY family transcriptional regulator, at 2,328,884 to 2,329,270
_RS10540
LRK54_RS10545: LRK54_RS10545 - TonB-dependent receptor, at 2,329,439 to 2,332,684
_RS10545
Group
Condition
LRK54
_RS10525
LRK54
_RS10530
LRK54
_RS10535
LRK54
_RS10540
LRK54
_RS10545
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.1
-0.2
-0.2
-2.4
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
-0.5
-0.1
-0.9
-0.1
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.6
-0.3
-0.2
-1.0
-0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.5
-0.2
-0.3
-0.8
-0.1
stress
R2A with Calcium chloride 250 mM
-0.4
-0.6
-0.1
-0.8
+0.0
stress
R2A with lithium chloride 15.625 mM
+0.1
-0.8
-0.2
-0.8
-0.1
r2a_control
R2A control
-0.1
-0.0
-0.1
-1.5
-0.0
biofilm assay; biofilm sample
biofilm; Day1; NLDM;
-0.1
-0.3
-0.3
-0.9
-0.1
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+0.3
+0.0
-0.3
-1.5
-0.0
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.1
-0.7
+0.1
-0.9
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.3
-0.2
+0.3
-1.0
+0.0
phage
2F-T1
+0.2
+0.0
+0.2
-1.5
+0.0
phage
4B-T2
+0.5
+0.0
+0.1
-1.4
+0.1
phage
4E-T1
-0.0
+0.6
+0.0
-0.9
-0.0
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.5
-0.2
-0.2
+0.7
+0.0
phage
4E-T2
+0.1
+0.7
+0.1
-0.6
+0.1
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.3
+0.4
+0.2
-0.7
+0.1
r2a_control
R2A control
+0.2
+0.4
+0.1
+0.6
+0.2
stress
R2A with FW104 filtrate 0.5 X
+0.2
+0.4
+0.0
+0.8
+0.2
stress
R2A with Manganese (II) chloride tetrahydrate 0.3125 mM
+0.4
+0.5
+0.3
+0.2
+0.2
r2a_control
R2A control
+0.3
+0.5
+0.3
+0.5
+0.1
stress
R2A with copper (II) chloride 0.3125 mM
+0.2
+0.4
+0.1
+0.9
+0.1
r2a_control
R2A control
+0.2
+0.5
+0.2
+0.6
+0.2
stress
R2A with nitrate 250 mM
+0.3
+0.5
+0.2
+0.6
+0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.1
+0.1
+0.2
+1.2
+0.2
stress
R2A with Aluminum chloride 3.125 mM
+0.1
+0.7
+0.3
+0.4
+0.2
stress
R2A with Manganese (II) chloride tetrahydrate 0.15625 mM
+0.3
+0.5
+0.3
+0.4
+0.2
r2a_control
R2A control
+0.5
+0.5
+0.3
+0.3
+0.2
stress
R2A with m-arsenite 0.078125 mM
+0.1
+0.9
+0.2
+0.6
+0.1
stress
R2A with m-arsenite 0.078125 mM
+0.3
+0.9
+0.3
+0.8
+0.2
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