Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS10365 and LRK54_RS10370 are separated by 406 nucleotidesLRK54_RS10370 and LRK54_RS10375 overlap by 4 nucleotidesLRK54_RS10375 and LRK54_RS10380 are separated by 288 nucleotidesLRK54_RS10380 and LRK54_RS10385 are separated by 31 nucleotides LRK54_RS10365: LRK54_RS10365 - homoserine dehydrogenase, at 2,284,065 to 2,285,210 _RS10365 LRK54_RS10370: LRK54_RS10370 - c-type cytochrome, at 2,285,617 to 2,286,393 _RS10370 LRK54_RS10375: LRK54_RS10375 - cytochrome c, at 2,286,390 to 2,287,673 _RS10375 LRK54_RS10380: LRK54_RS10380 - sugar phosphate isomerase/epimerase, at 2,287,962 to 2,289,203 _RS10380 LRK54_RS10385: LRK54_RS10385 - S-ribosylhomocysteine lyase, at 2,289,235 to 2,289,717 _RS10385
Group Condition LRK54_RS10365 LRK54_RS10370 LRK54_RS10375 LRK54_RS10380 LRK54_RS10385
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.7 +0.0 +0.0 -2.4 -2.6
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 +0.1 +0.1 -2.1 -1.6
carbon source Gly-Glu 20 mM -3.5 -0.1 -0.0 -0.0 +0.1
carbon source Gly-Glu 20 mM -2.5 -0.0 -0.1 -0.1 +0.0
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.5 -0.1 +0.1 -0.6 -0.7
carbon source NAG 20 mM -1.5 +0.0 +0.0 -0.0 -0.1
carbon source D-Maltose 20 mM -1.2 +0.0 -0.1 -0.0 -0.3
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.1 -0.2 -0.2 -0.0 -1.0
carbon source D-Glucose 20 mM -1.1 +0.1 -0.1 -0.0 -0.1
carbon source D-Glucose (C) and 20 AA mix; 20C -1.0 -0.0 +0.0 -0.0 -0.2
stress R2A with Selective_ion_mix_1 1 X -0.5 -0.1 -0.3 -0.1 -0.3
carbon source a-Cyclodextrin 20 mM -0.8 -0.1 +0.1 -0.2 -0.3
pH R2A_PIPES pH 4.25 -1.1 +0.0 +0.1 -0.0 -0.2
carbon source D-Glucose (C) and 20 AA mix; 30C -1.1 +0.1 +0.1 +0.1 -0.3
carbon source pyruvate 20 mM -1.1 +0.1 +0.1 +0.1 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.8 +0.1 +0.0 +0.0 -0.3
stress R2A with Cobalt chloride 0.15625 mM -1.0 -0.3 +0.3 -0.1 +0.1
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.9 +0.1 +0.0 +0.2 -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; -1.0 +0.0 +0.0 +0.1 +0.3
biofilm assay; planktonic sample planktonic; Day2; NLDM; -1.0 -0.0 +0.2 +0.1 +0.2
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.8 +0.0 +0.0 +0.0 +0.3
biofilm assay; planktonic sample planktonic; Day1; NLDM; -1.1 +0.2 +0.1 +0.2 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.4 -0.0 -0.2 -0.1 +0.6
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.4 -0.1 +0.2 -0.1 -0.5
stress R2A with Cobalt chloride 0.15625 mM -0.4 -0.3 +0.3 -0.2 +0.7
phage 1E-T1 -0.5 +0.3 +0.2 +0.3 -0.1
phage 4B-T1 -0.4 +0.1 +0.2 +0.2 +0.4
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.4 +0.2 +0.2 +0.2 -0.4
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.8 -0.1 -0.1 +0.1 +0.2
carbon source D-Glucose-6-Phosphate 20 mM +0.9 -0.1 -0.0 +0.0 +0.3
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