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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS10205 and LRK54_RS10210 overlap by 1 nucleotides
LRK54_RS10210 and LRK54_RS10215 are separated by 13 nucleotides
LRK54_RS10215 and LRK54_RS10220 are separated by 67 nucleotides
LRK54_RS10220 and LRK54_RS10225 are separated by 94 nucleotides
LRK54_RS10205: LRK54_RS10205 - aldose epimerase, at 2,248,945 to 2,249,946
_RS10205
LRK54_RS10210: LRK54_RS10210 - pyridoxal-phosphate dependent enzyme, at 2,249,946 to 2,250,893
_RS10210
LRK54_RS10215: LRK54_RS10215 - sterol desaturase family protein, at 2,250,907 to 2,252,025
_RS10215
LRK54_RS10220: LRK54_RS10220 - DMT family transporter, at 2,252,093 to 2,252,974
_RS10220
LRK54_RS10225: LRK54_RS10225 - DNA-3-methyladenine glycosylase I, at 2,253,069 to 2,253,650
_RS10225
Group
Condition
LRK54
_RS10205
LRK54
_RS10210
LRK54
_RS10215
LRK54
_RS10220
LRK54
_RS10225
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.0
-0.5
-0.4
-0.4
-0.1
stress
R2A_PIPES with Aluminum chloride 1.125 mM
+0.2
-1.3
-0.3
+0.2
-0.3
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.2
+0.1
-0.3
-0.4
-0.6
stress
R2A with Selective_ion_mix_1 1 X
+0.2
-0.6
-0.0
-0.3
-0.6
pH
R2A_PIPES pH 4.25
+0.2
-1.1
+0.0
-0.1
-0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.1
+0.3
-0.6
-0.5
-0.2
stress
R2A with chromate 0.0048828125 mM
+0.0
-0.9
-0.4
-0.0
+0.4
stress
R2A with Cesium chloride 3.90625 mM
+0.2
-0.1
-0.0
-0.6
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.1
-0.8
-0.2
+0.2
+0.1
stress
R2A with Aluminum chloride 3.125 mM
+0.2
-0.0
-0.3
-0.3
-0.4
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
+0.1
-0.7
-0.2
+0.4
-0.1
stress
R2A with m-arsenite 0.078125 mM
+0.1
+0.2
+0.2
-0.4
-0.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
+0.3
+0.2
-0.2
-0.6
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.0
-0.8
-0.0
+0.2
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.2
+0.4
-0.6
-0.0
+0.2
carbon source
NAG 20 mM
-0.7
+0.2
-0.1
+0.1
+0.2
stress
R2A with chromate 0.0048828125 mM
-0.2
+0.1
-0.1
-0.4
+0.6
phage
3E-T1
-0.2
+0.3
-0.2
-0.3
+0.3
carbon source
acetate 20 mM
+0.1
-0.2
+0.2
-0.3
+0.4
stress
R2A with SpecU metal mix 1 X
+0.5
+0.4
-0.4
-0.4
+0.1
phage
1E-T2
+0.3
-0.2
-0.2
+0.0
+0.3
phage
phage 31.1
-0.2
+0.5
-0.3
+0.2
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.1
+0.5
+0.2
+0.2
-0.4
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.4
-0.1
+0.4
-0.4
-0.0
stress
R2A with mercury (II) chloride 0.009765625 mM
+0.2
-0.0
-0.1
-0.3
+0.7
phage
2A-T2
+0.1
+0.6
+0.0
-0.3
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.6
+0.4
+0.2
-0.2
-0.1
carbon source
D-Glucose-6-Phosphate 20 mM
+0.1
+0.6
-0.2
+0.5
+0.0
phage
4B-T1
+0.0
-0.1
+0.1
+0.3
+0.7
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.2
+1.1
+0.2
+0.2
-0.0
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