Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS10190 and LRK54_RS10195 are separated by 594 nucleotidesLRK54_RS10195 and LRK54_RS10200 are separated by 83 nucleotidesLRK54_RS10200 and LRK54_RS10205 are separated by 70 nucleotidesLRK54_RS10205 and LRK54_RS10210 overlap by 1 nucleotides LRK54_RS10190: LRK54_RS10190 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 2,243,479 to 2,245,356 _RS10190 LRK54_RS10195: LRK54_RS10195 - hypothetical protein, at 2,245,951 to 2,246,136 _RS10195 LRK54_RS10200: LRK54_RS10200 - aminopeptidase N, at 2,246,220 to 2,248,874 _RS10200 LRK54_RS10205: LRK54_RS10205 - aldose epimerase, at 2,248,945 to 2,249,946 _RS10205 LRK54_RS10210: LRK54_RS10210 - pyridoxal-phosphate dependent enzyme, at 2,249,946 to 2,250,893 _RS10210
Group Condition LRK54_RS10190 LRK54_RS10195 LRK54_RS10200 LRK54_RS10205 LRK54_RS10210
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.3 -3.1 -0.0 -0.0 -0.4
phage phage 31.1 +0.1 -3.2 -0.2 -0.2 +0.5
pH R2A_PIPES pH 4.25 +0.1 -2.0 -0.1 +0.2 -1.1
phage 1E-T1 -0.2 -2.2 +0.1 -0.1 +0.0
carbon source a-Cyclodextrin 20 mM +0.3 -2.0 -0.3 -0.1 -0.1
carbon source acetate 20 mM -0.1 -2.1 +0.4 +0.1 -0.2
stress R2A with chromate 0.0048828125 mM +0.0 -1.1 -0.0 +0.0 -0.9
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.2 -1.6 +0.0 +0.1 -0.3
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.1 -1.6 -0.3 -0.1 +0.3
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM +0.2 -1.0 -0.0 -0.0 -0.8
phage 2F-T2 +0.1 -1.7 +0.2 -0.0 -0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.1 -0.2 -0.8 +0.1 -0.7
no stress control no stress control -0.2 -1.5 +0.2 +0.1 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.2 -1.7 -0.2 -0.1 +0.3
stress R2A with nitrite 25 mM +0.3 -1.6 -0.1 +0.1 -0.1
phage 3E-T1 -0.0 -1.5 +0.1 -0.2 +0.3
carbon source D-Glucose-6-Phosphate 20 mM -0.1 -1.9 -0.1 +0.1 +0.6
stress R2A with m-arsenite 0.0390625 mM +0.2 -1.6 -0.0 -0.0 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.2 -1.0 +0.1 +0.2 -0.3
r2a_control R2A control +0.4 -1.2 +0.0 +0.1 -0.3
stress R2A with Cobalt chloride 0.15625 mM +0.3 -1.1 -0.0 +0.3 -0.4
stress R2A_PIPES with Aluminum chloride 1.125 mM -0.0 +0.3 +0.1 +0.2 -1.3
stress R2A with lithium chloride 15.625 mM +1.2 -1.1 -0.1 +0.1 -0.3
stress R2A with bismuth(III) chloride 0.03125 mM +0.8 -0.6 -0.3 -0.2 +0.4
stress R2A with Nickel (II) chloride 0.3125 mM +1.0 +0.8 -0.7 -0.5 -0.0
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.5 -0.1 -0.6 +0.6 +0.4
stress R2A with Selective_ion_mix_1 1 X +0.4 +0.7 +0.1 +0.2 -0.6
stress R2A with sodium bromide 250 mM +0.6 +0.8 -0.1 +0.1 -0.5
stress R2A with Cesium chloride 3.90625 mM +0.7 +0.9 -0.1 +0.2 -0.1
stress R2A with SpecU metal mix 1 X +0.7 +0.5 +0.1 +0.5 +0.4
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