Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS09920 and LRK54_RS09925 are separated by 104 nucleotidesLRK54_RS09925 and LRK54_RS09930 are separated by 108 nucleotidesLRK54_RS09930 and LRK54_RS09935 are separated by 67 nucleotidesLRK54_RS09935 and LRK54_RS09940 are separated by 87 nucleotides LRK54_RS09920: LRK54_RS09920 - aldo/keto reductase, at 2,180,007 to 2,180,951 _RS09920 LRK54_RS09925: LRK54_RS09925 - hypothetical protein, at 2,181,056 to 2,181,253 _RS09925 LRK54_RS09930: LRK54_RS09930 - LysR substrate-binding domain-containing protein, at 2,181,362 to 2,182,282 _RS09930 LRK54_RS09935: LRK54_RS09935 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 2,182,350 to 2,183,462 _RS09935 LRK54_RS09940: LRK54_RS09940 - NYN domain-containing protein, at 2,183,550 to 2,184,212 _RS09940
Group Condition LRK54_RS09920 LRK54_RS09925 LRK54_RS09930 LRK54_RS09935 LRK54_RS09940
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 -0.3 N.D. -0.4 -0.5 -0.1
stress R2A with Strontium chloride 3.90625 mM +0.0 N.D. -1.4 +0.1 +0.1
r2a_control R2A control -0.0 N.D. -0.8 -0.0 -0.0
r2a_control R2A control +0.1 N.D. -0.6 +0.0 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 N.D. -0.4 -0.3 +0.1
carbon source Gly-Glu 20 mM +0.1 N.D. -1.3 +0.4 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.2 N.D. +0.1 +0.1 -0.4
r2a_control R2A control +0.2 N.D. -0.7 +0.0 +0.1
r2a_control R2A control +0.1 N.D. -0.6 +0.1 +0.0
carbon source Gly-Glu 20 mM +0.1 N.D. -1.1 +0.3 +0.4
stress R2A with Nickel (II) chloride 0.3125 mM +0.4 N.D. -1.3 +0.2 +0.5
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.3 N.D. -0.6 -0.2 +0.3
stress R2A with Uranyl acetate 2.5 mM +0.1 N.D. -0.5 +0.2 +0.1
r2a_control R2A control +0.1 N.D. -0.5 +0.2 -0.0
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.2 N.D. +0.3 -0.4 -0.1
stress R2A with Aluminum chloride 1.5625 mM +0.1 N.D. -0.4 +0.2 +0.1
stress R2A with Nickel (II) chloride 0.625 mM -0.1 N.D. +0.6 -0.0 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.3 N.D. +0.2 -0.0 +0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.3 N.D. +0.3 -0.2 +0.4
stress R2A with Nickel (II) chloride 0.625 mM -0.0 N.D. +0.7 +0.1 -0.0
phage 2F-T1 +0.2 N.D. +0.1 +0.2 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM +0.1 N.D. +0.2 +0.2 +0.3
stress R2A with arsenate 15.625 mM +0.2 N.D. +0.2 +0.1 +0.3
carbon source acetate 20 mM +0.1 N.D. +0.3 +0.2 +0.2
stress R2A with nitrite 50 mM +0.2 N.D. +0.2 +0.2 +0.2
stress R2A with m-arsenite 0.078125 mM +0.2 N.D. +0.3 +0.2 +0.3
stress R2A with Zinc chloride 0.625 mM +0.1 N.D. +0.4 +0.2 +0.2
stress R2A with Aluminum chloride 3.125 mM +0.1 N.D. +0.1 +0.6 +0.1
phage 1C-T1 +0.3 N.D. +0.3 +0.1 +0.3
stress R2A with Zinc chloride 0.625 mM +0.1 N.D. +0.5 +0.2 +0.1
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