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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09825 and LRK54_RS09830 are separated by 48 nucleotides
LRK54_RS09830 and LRK54_RS09835 are separated by 193 nucleotides
LRK54_RS09835 and LRK54_RS09840 are separated by 490 nucleotides
LRK54_RS09840 and LRK54_RS09845 are separated by 103 nucleotides
LRK54_RS09825: LRK54_RS09825 - alpha/beta hydrolase, at 2,144,049 to 2,144,738
_RS09825
LRK54_RS09830: LRK54_RS09830 - ACP phosphodiesterase, at 2,144,787 to 2,145,380
_RS09830
LRK54_RS09835: LRK54_RS09835 - c-type cytochrome, at 2,145,574 to 2,146,095
_RS09835
LRK54_RS09840: LRK54_RS09840 - efflux RND transporter periplasmic adaptor subunit, at 2,146,586 to 2,147,827
_RS09840
LRK54_RS09845: LRK54_RS09845 - efflux RND transporter permease subunit, at 2,147,931 to 2,151,170
_RS09845
Group
Condition
LRK54
_RS09825
LRK54
_RS09830
LRK54
_RS09835
LRK54
_RS09840
LRK54
_RS09845
stress
R2A with Nickel (II) chloride 0.3125 mM
-1.9
-0.0
-1.5
-1.5
-1.8
stress
R2A with silver chloride 1 mM
-1.1
-0.3
-4.2
-0.1
-0.3
stress
R2A with silver chloride 1 mM
-1.3
-0.1
-3.6
-0.1
-0.2
stress
R2A with bismuth(III) chloride 0.03125 mM
-1.8
-0.1
-0.6
-1.5
-1.2
stress
R2A with Cesium chloride 3.90625 mM
-2.1
+0.0
-2.0
-0.4
-0.4
stress
R2A with Cesium chloride 3.90625 mM
-2.2
-0.1
-1.6
-0.4
-0.6
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.6
-0.1
-1.1
-1.1
-1.6
stress
R2A with Chloride 250 mM
-2.0
-0.1
-1.2
-0.4
-0.6
stress
R2A with Magnesium sulfate 3.90625 mM
-1.5
-0.2
-1.2
-0.6
-0.8
stress
R2A with SpecU metal mix 1 X
-0.5
-0.1
-1.9
-0.7
-1.1
pH
R2A_PIPES pH 4
-0.5
+0.0
+0.4
-1.9
-2.3
stress
R2A with sodium bromide 250 mM
-1.7
-0.1
-1.2
-0.5
-0.6
stress
R2A with Chloride 250 mM
-1.8
-0.0
-1.1
-0.4
-0.4
pH
R2A_PIPES pH 4
-0.5
+0.2
+0.7
-2.0
-2.3
stress
R2A with Chloride 250 mM
-1.8
+0.1
-1.0
-0.5
-0.5
stress
R2A with sodium bromide 250 mM
-1.4
-0.2
-1.2
-0.5
-0.5
stress
R2A with Chloride 250 mM
-1.8
-0.0
-1.2
-0.4
-0.4
stress
R2A with sulfate 250 mM
-1.4
+0.1
-1.6
-0.4
-0.4
r2a_control
R2A control
-1.1
-0.0
-0.8
-0.7
-1.0
stress
R2A with sulfate 250 mM
-1.1
-0.2
-1.3
-0.4
-0.5
stress
R2A with nitrite 50 mM
-1.3
-0.1
+0.5
-0.9
-1.3
stress
R2A with nitrite 25 mM
-1.5
-0.1
+0.5
-0.7
-1.1
stress
R2A with nitrite 50 mM
-1.1
-0.1
+0.6
-0.9
-1.4
stress
R2A with m-arsenite 0.078125 mM
-1.2
+0.1
+1.1
-1.2
-1.7
stress
R2A with m-arsenite 0.078125 mM
-1.4
+0.1
+1.0
-1.1
-1.5
stress
R2A with nitrite 25 mM
-0.9
+0.1
+0.6
-0.7
-1.3
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
-1.0
-0.0
+2.0
-0.3
-0.8
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.6
+0.1
+3.6
-0.2
-0.3
stress
R2A with Cobalt chloride 0.15625 mM
+1.2
-0.1
-0.3
+1.3
+1.3
stress
R2A with Cobalt chloride 0.15625 mM
+1.5
-0.0
-0.6
+1.3
+1.4
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LRK54_RS09835
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