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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09780 and LRK54_RS09785 are separated by 134 nucleotides
LRK54_RS09785 and LRK54_RS09790 are separated by 80 nucleotides
LRK54_RS09790 and LRK54_RS09795 are separated by 122 nucleotides
LRK54_RS09795 and LRK54_RS09800 are separated by 88 nucleotides
LRK54_RS09780: LRK54_RS09780 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 2,135,000 to 2,136,193
_RS09780
LRK54_RS09785: LRK54_RS09785 - YdcF family protein, at 2,136,328 to 2,137,032
_RS09785
LRK54_RS09790: LRK54_RS09790 - hypothetical protein, at 2,137,113 to 2,137,553
_RS09790
LRK54_RS09795: LRK54_RS09795 - oxygen-dependent coproporphyrinogen oxidase, at 2,137,676 to 2,138,590
_RS09795
LRK54_RS09800: LRK54_RS09800 - hypothetical protein, at 2,138,679 to 2,139,350
_RS09800
Group
Condition
LRK54
_RS09780
LRK54
_RS09785
LRK54
_RS09790
LRK54
_RS09795
LRK54
_RS09800
stress
R2A with bismuth(III) chloride 0.03125 mM
-3.5
+0.4
+0.4
N.D.
N.D.
pH
R2A_PIPES pH 4
-2.8
+0.3
+0.1
N.D.
N.D.
pH
R2A_PIPES pH 4
-2.4
+0.3
+0.1
N.D.
N.D.
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.5
-1.1
-0.4
N.D.
N.D.
stress
R2A with arsenate 31.25 mM
-1.8
+0.1
+0.4
N.D.
N.D.
stress
R2A with arsenate 31.25 mM
-1.4
+0.1
+0.0
N.D.
N.D.
stress
R2A with nitrate 250 mM
-1.2
+0.0
+0.1
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.3
-0.0
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.0
-0.6
-0.3
N.D.
N.D.
stress
R2A with sodium bromide 250 mM
-1.0
-0.1
+0.2
N.D.
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.7
-0.2
+0.0
N.D.
N.D.
stress
R2A with nitrate 250 mM
-1.1
+0.2
+0.1
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.3
-0.5
N.D.
N.D.
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.4
-0.3
+0.2
N.D.
N.D.
stress
R2A with sulfate 250 mM
-0.3
-0.4
+0.2
N.D.
N.D.
stress
R2A with Chloride 250 mM
-0.5
-0.1
+0.3
N.D.
N.D.
stress
R2A with sodium bromide 250 mM
-0.6
+0.2
+0.1
N.D.
N.D.
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
-0.4
-0.2
+0.3
N.D.
N.D.
stress
R2A with Chloride 250 mM
-0.7
+0.2
+0.4
N.D.
N.D.
stress
R2A with Calcium chloride 125 mM
-0.4
+0.3
+0.1
N.D.
N.D.
stress
R2A with m-arsenite 0.078125 mM
-0.4
+0.2
+0.3
N.D.
N.D.
stress
R2A with lithium chloride 15.625 mM
-0.4
+0.1
+0.3
N.D.
N.D.
stress
R2A with lithium chloride 15.625 mM
-0.5
+0.2
+0.3
N.D.
N.D.
stress
R2A with Cobalt chloride 0.15625 mM
-0.4
+0.6
-0.1
N.D.
N.D.
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.6
+0.5
+0.3
N.D.
N.D.
stress
R2A with silver chloride 1 mM
-0.4
+0.4
+0.3
N.D.
N.D.
stress
R2A with Aluminum chloride 3.125 mM
+0.6
-0.1
-0.1
N.D.
N.D.
phage
2E-T2
-0.1
+0.6
-0.1
N.D.
N.D.
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.1
+0.5
+0.3
N.D.
N.D.
carbon source
a-Cyclodextrin 20 mM
+0.9
+0.1
+0.1
N.D.
N.D.
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LRK54_RS09790
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