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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09760 and LRK54_RS09765 are separated by 62 nucleotides
LRK54_RS09765 and LRK54_RS09770 are separated by 47 nucleotides
LRK54_RS09770 and LRK54_RS09775 are separated by 2 nucleotides
LRK54_RS09775 and LRK54_RS09780 overlap by 4 nucleotides
LRK54_RS09760: LRK54_RS09760 - 3-oxoacyl-ACP reductase FabG, at 2,132,079 to 2,132,816
_RS09760
LRK54_RS09765: LRK54_RS09765 - hypothetical protein, at 2,132,879 to 2,133,409
_RS09765
LRK54_RS09770: LRK54_RS09770 - glycosyltransferase family 2 protein, at 2,133,457 to 2,134,206
_RS09770
LRK54_RS09775: LRK54_RS09775 - beta-ketoacyl synthase chain length factor, at 2,134,209 to 2,135,003
_RS09775
LRK54_RS09780: LRK54_RS09780 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 2,135,000 to 2,136,193
_RS09780
Group
Condition
LRK54
_RS09760
LRK54
_RS09765
LRK54
_RS09770
LRK54
_RS09775
LRK54
_RS09780
stress
R2A with bismuth(III) chloride 0.03125 mM
-2.2
+0.4
-3.0
-3.6
-3.5
pH
R2A_PIPES pH 4
-1.3
+0.1
-3.2
-2.7
-2.8
pH
R2A_PIPES pH 4
-1.4
+0.0
-2.1
-2.6
-2.4
stress
R2A with arsenate 31.25 mM
-0.8
+0.0
-1.6
-1.7
-1.8
stress
R2A with nitrate 250 mM
-1.5
+0.0
-1.3
-1.4
-1.1
stress
R2A with arsenate 31.25 mM
-0.9
+0.1
-1.0
-1.2
-1.4
stress
R2A with nitrate 250 mM
-0.7
+0.0
-1.1
-1.2
-1.2
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-1.0
+0.1
-1.1
-0.7
-0.7
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.7
-0.2
-1.1
-0.5
-0.5
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.9
+0.1
-0.7
-0.6
-0.7
pH
R2A_PIPES pH 4.25
-0.8
-0.0
-0.7
-0.7
-0.5
stress
R2A with sodium bromide 250 mM
-0.3
+0.1
-0.6
-0.8
-1.0
stress
R2A with Chloride 250 mM
-0.2
+0.1
-0.8
-0.8
-0.7
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.5
-0.6
-0.6
-0.5
-0.2
stress
R2A with sodium bromide 250 mM
-0.5
-0.0
-0.7
-0.4
-0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
-0.1
-0.4
-0.5
-0.6
stress
R2A with nitrite 50 mM
-0.4
+0.0
-0.7
-0.5
-0.5
stress
R2A with Chloride 250 mM
-0.4
-0.1
-0.5
-0.5
-0.5
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.5
-0.0
-0.7
-0.3
-0.4
stress
R2A with silver chloride 1 mM
-0.6
-0.1
-0.3
-0.5
-0.4
pH
R2A_PIPES pH 4.25
-0.3
-0.0
-0.5
-0.5
-0.5
stress
R2A with Gallium(III)chloride 0.78125 mM
-0.2
+0.0
-0.7
-0.5
-0.4
stress
R2A with Calcium chloride 250 mM
-0.2
-0.1
-0.5
-0.5
-0.5
stress
R2A with m-arsenite 0.078125 mM
-0.0
+0.1
-0.7
-0.5
-0.4
stress
R2A with Magnesium sulfate 3.90625 mM
-0.4
+0.1
-0.7
-0.3
-0.2
stress
R2A with silver chloride 1 mM
-0.7
+0.2
-0.3
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.3125 mM
+0.5
-0.4
-0.3
+0.3
+0.4
stress
R2A with Aluminum chloride 3.125 mM
+0.5
-0.1
+0.4
+0.7
+0.6
carbon source
a-Cyclodextrin 20 mM
+0.4
-0.1
+1.2
+0.6
+0.4
carbon source
a-Cyclodextrin 20 mM
+0.9
-0.1
+1.3
+0.9
+0.9
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