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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09690 and LRK54_RS09695 are separated by 73 nucleotides
LRK54_RS09695 and LRK54_RS09700 are separated by 141 nucleotides
LRK54_RS09700 and LRK54_RS09705 are separated by 55 nucleotides
LRK54_RS09705 and LRK54_RS09710 are separated by 52 nucleotides
LRK54_RS09690: LRK54_RS09690 - F0F1 ATP synthase subunit alpha, at 2,118,514 to 2,120,064
_RS09690
LRK54_RS09695: LRK54_RS09695 - F0F1 ATP synthase subunit gamma, at 2,120,138 to 2,121,055
_RS09695
LRK54_RS09700: LRK54_RS09700 - F0F1 ATP synthase subunit beta, at 2,121,197 to 2,122,609
_RS09700
LRK54_RS09705: LRK54_RS09705 - F0F1 ATP synthase subunit epsilon, at 2,122,665 to 2,123,090
_RS09705
LRK54_RS09710: LRK54_RS09710 - hypothetical protein, at 2,123,143 to 2,123,799
_RS09710
Group
Condition
LRK54
_RS09690
LRK54
_RS09695
LRK54
_RS09700
LRK54
_RS09705
LRK54
_RS09710
stress
R2A with chromate 0.0048828125 mM
N.D.
N.D.
N.D.
N.D.
-0.5
stress
R2A with Cobalt chloride 0.15625 mM
N.D.
N.D.
N.D.
N.D.
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
N.D.
N.D.
N.D.
N.D.
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
N.D.
N.D.
N.D.
N.D.
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
N.D.
N.D.
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
N.D.
N.D.
-0.4
phage
1A-T2
N.D.
N.D.
N.D.
N.D.
-0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
N.D.
N.D.
N.D.
N.D.
-0.3
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
N.D.
N.D.
N.D.
N.D.
-0.3
phage
1D-T2
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with nitrate 125 mM
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with m-arsenite 0.0390625 mM
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Strontium chloride 3.90625 mM
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM
N.D.
N.D.
N.D.
N.D.
+0.3
no phage control
No phage control
N.D.
N.D.
N.D.
N.D.
+0.3
pH
R2A pH6
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with nitrite 50 mM
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A_PIPES with Cobalt chloride 256 uM
N.D.
N.D.
N.D.
N.D.
+0.3
pH
R2A_PIPES pH 4
N.D.
N.D.
N.D.
N.D.
+0.3
r2a_control
R2A control
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Manganese (II) chloride tetrahydrate 3.125 mM
N.D.
N.D.
N.D.
N.D.
+0.4
pH
R2A_PIPES pH 4
N.D.
N.D.
N.D.
N.D.
+0.4
stress
R2A with Zinc chloride 0.625 mM
N.D.
N.D.
N.D.
N.D.
+0.4
stress
R2A with Selective_ion_mix_1 1 X
N.D.
N.D.
N.D.
N.D.
+0.4
phage
1E-T1
N.D.
N.D.
N.D.
N.D.
+0.4
stress
R2A with silver chloride 1 mM
N.D.
N.D.
N.D.
N.D.
+0.4
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
N.D.
N.D.
N.D.
N.D.
+0.4
stress
R2A_PIPES with Nickel (II) chloride 424 uM
N.D.
N.D.
N.D.
N.D.
+0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
N.D.
N.D.
N.D.
+0.8
stress
R2A with bismuth(III) chloride 0.03125 mM
N.D.
N.D.
N.D.
N.D.
+1.2
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