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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09545 and LRK54_RS09550 are separated by 179 nucleotides
LRK54_RS09550 and LRK54_RS09555 are separated by 352 nucleotides
LRK54_RS09555 and LRK54_RS09560 are separated by 139 nucleotides
LRK54_RS09560 and LRK54_RS09565 are separated by 133 nucleotides
LRK54_RS09545: LRK54_RS09545 - hypothetical protein, at 2,098,676 to 2,099,134
_RS09545
LRK54_RS09550: LRK54_RS09550 - CBS domain-containing protein, at 2,099,314 to 2,099,820
_RS09550
LRK54_RS09555: LRK54_RS09555 - AraC family transcriptional regulator, at 2,100,173 to 2,101,027
_RS09555
LRK54_RS09560: LRK54_RS09560 - carboxymuconolactone decarboxylase family protein, at 2,101,167 to 2,101,724
_RS09560
LRK54_RS09565: LRK54_RS09565 - EthD family reductase, at 2,101,858 to 2,102,160
_RS09565
Group
Condition
LRK54
_RS09545
LRK54
_RS09550
LRK54
_RS09555
LRK54
_RS09560
LRK54
_RS09565
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.8
-0.4
-0.3
-0.0
-0.4
carbon source
a-Cyclodextrin 20 mM
-0.5
-0.0
-0.2
-0.6
+0.0
phage
4E-T1
-0.6
-0.2
-0.2
-0.3
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-1.6
+0.2
-0.1
+0.4
-0.0
phage
4E-T2
-0.2
-0.2
-0.3
-0.3
-0.1
stress
R2A with chromate 0.0048828125 mM
-0.4
+0.7
+0.1
-0.9
-0.5
carbon source
D-Glucose (C) and 20 AA mix; 20C
-0.2
-0.4
+0.1
-0.2
+0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.4
-0.0
+0.2
-0.3
-0.1
stress
R2A with Aluminum chloride 3.125 mM
+0.2
-0.3
-0.0
-0.2
-0.4
carbon source
D-Glucose-6-Phosphate 20 mM
+0.1
-0.6
-0.1
-0.2
+0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.3
-0.4
-0.1
-0.2
-0.1
carbon source
D-Glucose (C) and 20 AA mix; 30C
+0.1
-0.3
+0.1
-0.5
+0.1
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.6
+0.1
-0.1
-0.1
+0.4
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.1
-0.5
+0.0
+0.2
-0.2
stress
R2A with arsenate 15.625 mM
-0.4
+0.1
-0.0
+0.2
-0.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
-0.3
-0.1
+0.4
-0.2
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.6
+0.2
-0.1
+0.0
+0.2
stress
R2A with Cobalt chloride 0.15625 mM
+0.0
+0.1
+0.2
-0.6
+0.1
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
-0.2
+0.1
-0.4
+0.1
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-0.4
+0.1
+0.2
+0.3
-0.2
phage
phage 31.1
+0.4
-0.1
-0.4
+0.3
-0.1
stress
R2A with chromate 0.0048828125 mM
-0.5
+0.7
+0.1
-0.3
+0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.3
+0.5
+0.2
-0.3
-0.5
stress
R2A with Selective_ion_mix_1 1 X
-0.3
+0.1
-0.3
+0.7
+0.1
phage
1C-T1
+0.6
+0.1
+0.2
-0.5
-0.1
stress
R2A with silver chloride 1 mM
+0.1
-0.4
+0.4
+0.5
-0.2
phage
2B-T2
+0.6
+0.1
-0.2
+0.0
-0.1
biofilm assay; planktonic sample
planktonic; Day1; NLDM;
-0.2
-0.1
+0.3
+0.5
-0.0
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
+0.0
+0.1
+0.3
+0.6
-0.1
stress
R2A with Selective_ion_mix_1 1 X
+0.4
-0.4
+0.2
+0.8
+0.0
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