Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS09545 and LRK54_RS09550 are separated by 179 nucleotidesLRK54_RS09550 and LRK54_RS09555 are separated by 352 nucleotidesLRK54_RS09555 and LRK54_RS09560 are separated by 139 nucleotidesLRK54_RS09560 and LRK54_RS09565 are separated by 133 nucleotides LRK54_RS09545: LRK54_RS09545 - hypothetical protein, at 2,098,676 to 2,099,134 _RS09545 LRK54_RS09550: LRK54_RS09550 - CBS domain-containing protein, at 2,099,314 to 2,099,820 _RS09550 LRK54_RS09555: LRK54_RS09555 - AraC family transcriptional regulator, at 2,100,173 to 2,101,027 _RS09555 LRK54_RS09560: LRK54_RS09560 - carboxymuconolactone decarboxylase family protein, at 2,101,167 to 2,101,724 _RS09560 LRK54_RS09565: LRK54_RS09565 - EthD family reductase, at 2,101,858 to 2,102,160 _RS09565
Group Condition LRK54_RS09545 LRK54_RS09550 LRK54_RS09555 LRK54_RS09560 LRK54_RS09565
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.8 -0.4 -0.3 -0.0 -0.4
carbon source a-Cyclodextrin 20 mM -0.5 -0.0 -0.2 -0.6 +0.0
phage 4E-T1 -0.6 -0.2 -0.2 -0.3 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -1.6 +0.2 -0.1 +0.4 -0.0
phage 4E-T2 -0.2 -0.2 -0.3 -0.3 -0.1
stress R2A with chromate 0.0048828125 mM -0.4 +0.7 +0.1 -0.9 -0.5
carbon source D-Glucose (C) and 20 AA mix; 20C -0.2 -0.4 +0.1 -0.2 +0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.4 -0.0 +0.2 -0.3 -0.1
stress R2A with Aluminum chloride 3.125 mM +0.2 -0.3 -0.0 -0.2 -0.4
carbon source D-Glucose-6-Phosphate 20 mM +0.1 -0.6 -0.1 -0.2 +0.2
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.3 -0.4 -0.1 -0.2 -0.1
carbon source D-Glucose (C) and 20 AA mix; 30C +0.1 -0.3 +0.1 -0.5 +0.1
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM -0.6 +0.1 -0.1 -0.1 +0.4
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 -0.5 +0.0 +0.2 -0.2
stress R2A with arsenate 15.625 mM -0.4 +0.1 -0.0 +0.2 -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.0 -0.3 -0.1 +0.4 -0.2
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.6 +0.2 -0.1 +0.0 +0.2
stress R2A with Cobalt chloride 0.15625 mM +0.0 +0.1 +0.2 -0.6 +0.1
stress R2A with bismuth(III) chloride 0.03125 mM +0.3 -0.2 +0.1 -0.4 +0.1
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.1 +0.2 +0.3 -0.2
phage phage 31.1 +0.4 -0.1 -0.4 +0.3 -0.1
stress R2A with chromate 0.0048828125 mM -0.5 +0.7 +0.1 -0.3 +0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 +0.5 +0.2 -0.3 -0.5
stress R2A with Selective_ion_mix_1 1 X -0.3 +0.1 -0.3 +0.7 +0.1
phage 1C-T1 +0.6 +0.1 +0.2 -0.5 -0.1
stress R2A with silver chloride 1 mM +0.1 -0.4 +0.4 +0.5 -0.2
phage 2B-T2 +0.6 +0.1 -0.2 +0.0 -0.1
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.2 -0.1 +0.3 +0.5 -0.0
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.0 +0.1 +0.3 +0.6 -0.1
stress R2A with Selective_ion_mix_1 1 X +0.4 -0.4 +0.2 +0.8 +0.0
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