Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS09420 and LRK54_RS09425 are separated by 389 nucleotidesLRK54_RS09425 and LRK54_RS09430 are separated by 101 nucleotidesLRK54_RS09430 and LRK54_RS09435 are separated by 138 nucleotidesLRK54_RS09435 and LRK54_RS09440 are separated by 5 nucleotides LRK54_RS09420: LRK54_RS09420 - RNA polymerase sigma factor, at 2,065,380 to 2,065,934 _RS09420 LRK54_RS09425: LRK54_RS09425 - TonB-dependent receptor, at 2,066,324 to 2,069,029 _RS09425 LRK54_RS09430: LRK54_RS09430 - Atxe2 family lasso peptide isopeptidase, at 2,069,131 to 2,071,248 _RS09430 LRK54_RS09435: LRK54_RS09435 - RNA polymerase sigma factor, at 2,071,387 to 2,071,905 _RS09435 LRK54_RS09440: LRK54_RS09440 - FecR domain-containing protein, at 2,071,911 to 2,073,074 _RS09440
Group Condition LRK54_RS09420 LRK54_RS09425 LRK54_RS09430 LRK54_RS09435 LRK54_RS09440
pH R2A_PIPES pH 4 -0.1 +0.0 -0.0 -0.1 -1.8
phage 4E-T1 -0.9 -0.4 -0.3 -0.2 -0.3
pH R2A_PIPES pH 4 -0.0 -0.0 -0.0 -0.1 -1.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -2.2 -0.0 +0.0 -0.1 +0.6
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -1.6 -0.2 +0.1 -0.0 +0.2
pH R2A_PIPES pH 4.25 -0.0 -0.0 -0.0 -0.6 -0.9
no phage control No phage control -0.6 -0.1 -0.0 -0.3 -0.4
biofilm assay; planktonic sample planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -1.3 -0.0 +0.0 +0.2 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -2.0 +0.1 -0.0 +0.1 +0.5
stress R2A_PIPES with Cobalt chloride 256 uM -0.2 -0.0 -0.0 -0.1 -1.0
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -1.0 +0.0 -0.2 +0.2 -0.3
stress R2A with arsenate 31.25 mM -0.2 -0.1 +0.0 +0.0 -1.0
stress R2A_PIPES with Cadmium chloride 16 uM -0.4 +0.0 +0.1 -0.2 -0.8
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.2 -0.1 +0.1 -0.0 -1.0
stress R2A with Cesium chloride 3.90625 mM -0.6 -0.0 -0.1 +0.2 -0.5
stress R2A with Zinc chloride 0.625 mM -1.0 +0.0 +0.1 -0.2 +0.0
stress R2A_PIPES with Cobalt chloride 256 uM -0.4 -0.0 +0.1 +0.1 -0.7
pH R2A_PIPES pH 4.25 +0.2 +0.1 -0.0 -0.2 -1.1
stress R2A with bismuth(III) chloride 0.03125 mM +0.3 -0.1 +0.1 -0.6 -0.7
phage 1C-T2 -1.1 -0.0 -0.0 +0.4 -0.1
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.7 +0.2 -0.4 -0.2 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.6 +0.1 +0.3 -0.0 -0.3
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +1.1 -0.1 -0.1 -0.1 -0.1
carbon source D-Glucose-6-Phosphate 20 mM +0.2 +0.2 -0.1 -0.1 +0.7
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +1.1 -0.0 -0.1 +0.1 +0.2
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.7 +0.1 +0.1 -0.1 +0.5
carbon source D-Glucose-6-Phosphate 20 mM +0.1 +0.1 -0.0 +0.2 +1.0
carbon source a-Cyclodextrin 20 mM -0.2 +0.1 -0.0 -0.1 +1.6
carbon source acetate 20 mM +0.9 +0.0 +0.0 +0.3 +0.4
carbon source a-Cyclodextrin 20 mM +1.0 +0.2 -0.0 +0.4 +1.4
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