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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09420 and LRK54_RS09425 are separated by 389 nucleotides
LRK54_RS09425 and LRK54_RS09430 are separated by 101 nucleotides
LRK54_RS09430 and LRK54_RS09435 are separated by 138 nucleotides
LRK54_RS09435 and LRK54_RS09440 are separated by 5 nucleotides
LRK54_RS09420: LRK54_RS09420 - RNA polymerase sigma factor, at 2,065,380 to 2,065,934
_RS09420
LRK54_RS09425: LRK54_RS09425 - TonB-dependent receptor, at 2,066,324 to 2,069,029
_RS09425
LRK54_RS09430: LRK54_RS09430 - Atxe2 family lasso peptide isopeptidase, at 2,069,131 to 2,071,248
_RS09430
LRK54_RS09435: LRK54_RS09435 - RNA polymerase sigma factor, at 2,071,387 to 2,071,905
_RS09435
LRK54_RS09440: LRK54_RS09440 - FecR domain-containing protein, at 2,071,911 to 2,073,074
_RS09440
Group
Condition
LRK54
_RS09420
LRK54
_RS09425
LRK54
_RS09430
LRK54
_RS09435
LRK54
_RS09440
pH
R2A_PIPES pH 4
-0.1
+0.0
-0.0
-0.1
-1.8
phage
4E-T1
-0.9
-0.4
-0.3
-0.2
-0.3
pH
R2A_PIPES pH 4
-0.0
-0.0
-0.0
-0.1
-1.5
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-2.2
-0.0
+0.0
-0.1
+0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-1.6
-0.2
+0.1
-0.0
+0.2
pH
R2A_PIPES pH 4.25
-0.0
-0.0
-0.0
-0.6
-0.9
no phage control
No phage control
-0.6
-0.1
-0.0
-0.3
-0.4
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
-1.3
-0.0
+0.0
+0.2
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-2.0
+0.1
-0.0
+0.1
+0.5
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.2
-0.0
-0.0
-0.1
-1.0
biofilm assay; planktonic sample
planktonic; Day2; NLDM; Aluminum chloride 1mM
-1.0
+0.0
-0.2
+0.2
-0.3
stress
R2A with arsenate 31.25 mM
-0.2
-0.1
+0.0
+0.0
-1.0
stress
R2A_PIPES with Cadmium chloride 16 uM
-0.4
+0.0
+0.1
-0.2
-0.8
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
-0.2
-0.1
+0.1
-0.0
-1.0
stress
R2A with Cesium chloride 3.90625 mM
-0.6
-0.0
-0.1
+0.2
-0.5
stress
R2A with Zinc chloride 0.625 mM
-1.0
+0.0
+0.1
-0.2
+0.0
stress
R2A_PIPES with Cobalt chloride 256 uM
-0.4
-0.0
+0.1
+0.1
-0.7
pH
R2A_PIPES pH 4.25
+0.2
+0.1
-0.0
-0.2
-1.1
stress
R2A with bismuth(III) chloride 0.03125 mM
+0.3
-0.1
+0.1
-0.6
-0.7
phage
1C-T2
-1.1
-0.0
-0.0
+0.4
-0.1
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
-0.7
+0.2
-0.4
-0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
+0.1
+0.3
-0.0
-0.3
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
+1.1
-0.1
-0.1
-0.1
-0.1
carbon source
D-Glucose-6-Phosphate 20 mM
+0.2
+0.2
-0.1
-0.1
+0.7
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
+1.1
-0.0
-0.1
+0.1
+0.2
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
+0.7
+0.1
+0.1
-0.1
+0.5
carbon source
D-Glucose-6-Phosphate 20 mM
+0.1
+0.1
-0.0
+0.2
+1.0
carbon source
a-Cyclodextrin 20 mM
-0.2
+0.1
-0.0
-0.1
+1.6
carbon source
acetate 20 mM
+0.9
+0.0
+0.0
+0.3
+0.4
carbon source
a-Cyclodextrin 20 mM
+1.0
+0.2
-0.0
+0.4
+1.4
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