Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS09290 and LRK54_RS09295 are separated by 62 nucleotidesLRK54_RS09295 and LRK54_RS09300 are separated by 63 nucleotidesLRK54_RS09300 and LRK54_RS09305 are separated by 11 nucleotidesLRK54_RS09305 and LRK54_RS09310 are separated by 45 nucleotides LRK54_RS09290: LRK54_RS09290 - regulatory signaling modulator protein AmpE, at 2,039,487 to 2,040,353 _RS09290 LRK54_RS09295: LRK54_RS09295 - hypothetical protein, at 2,040,416 to 2,041,105 _RS09295 LRK54_RS09300: LRK54_RS09300 - NAD(+) diphosphatase, at 2,041,169 to 2,042,143 _RS09300 LRK54_RS09305: LRK54_RS09305 - iron-sulfur cluster insertion protein ErpA, at 2,042,155 to 2,042,523 _RS09305 LRK54_RS09310: LRK54_RS09310 - polymer-forming cytoskeletal protein, at 2,042,569 to 2,043,000 _RS09310
Group Condition LRK54_RS09290 LRK54_RS09295 LRK54_RS09300 LRK54_RS09305 LRK54_RS09310
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 +0.1 -1.1 N.D. N.D.
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.0 -0.0 -1.0 N.D. N.D.
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.0 +0.1 -1.0 N.D. N.D.
phage 1B-T1 -0.3 -0.2 -0.3 N.D. N.D.
carbon source acetate 20 mM -0.0 -0.1 -0.7 N.D. N.D.
phage 4E-T1 -0.2 -0.3 -0.3 N.D. N.D.
phage 4B-T1 -0.2 -0.3 -0.3 N.D. N.D.
phage 4E-T2 -0.3 -0.2 -0.2 N.D. N.D.
phage 3E-T1 -0.2 -0.2 -0.2 N.D. N.D.
stress R2A with Selective_ion_mix_1 1 X -0.5 -0.1 -0.1 N.D. N.D.
phage 2A-T1 -0.2 -0.1 -0.3 N.D. N.D.
stress R2A with Selective_ion_mix_1 1 X -0.3 -0.2 -0.1 N.D. N.D.
stress R2A with chromate 0.0048828125 mM -0.3 -0.1 -0.2 N.D. N.D.
phage 1C-T1 +0.0 -0.2 -0.5 N.D. N.D.
phage 2F-T2 -0.0 -0.1 -0.4 N.D. N.D.
biofilm assay; planktonic sample planktonic; Day2; NLDM; Aluminum chloride 1mM -0.4 +0.1 -0.2 N.D. N.D.
anaerobic Anaerobic, acetate donor; nitrate electron acceptor +0.2 -0.1 -0.6 N.D. N.D.
biofilm assay; biofilm sample biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 +0.1 -0.7 N.D. N.D.
carbon source acetate 20 mM +0.1 +0.0 -0.5 N.D. N.D.
stress R2A with chromate 0.0048828125 mM -0.3 -0.2 +0.2 N.D. N.D.
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.2 +0.2 -0.6 N.D. N.D.
stress R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.3 +0.0 +0.4 N.D. N.D.
stress R2A with Cobalt chloride 0.15625 mM -0.2 +0.2 +0.3 N.D. N.D.
carbon source D-Glucose-6-Phosphate 20 mM -0.2 +0.1 +0.5 N.D. N.D.
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.0 +0.2 +0.4 N.D. N.D.
pH R2A_PIPES pH 4 +0.4 -0.0 +0.3 N.D. N.D.
pH R2A_PIPES pH 4.25 +0.2 +0.2 +0.2 N.D. N.D.
pH R2A_PIPES pH 4 +0.5 +0.1 +0.2 N.D. N.D.
biofilm assay; planktonic sample Planktonic; Day2; SGW; pH7 +0.1 +0.2 +0.6 N.D. N.D.
stress R2A with bismuth(III) chloride 0.03125 mM +0.9 -0.1 +0.4 N.D. N.D.
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