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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS09160 and LRK54_RS09165 are separated by 509 nucleotides
LRK54_RS09165 and LRK54_RS09170 are separated by 96 nucleotides
LRK54_RS09170 and LRK54_RS09175 overlap by 4 nucleotides
LRK54_RS09175 and LRK54_RS09180 are separated by 58 nucleotides
LRK54_RS09160: LRK54_RS09160 - arginine--tRNA ligase, at 2,005,936 to 2,007,624
_RS09160
LRK54_RS09165: LRK54_RS09165 - DNA repair protein RadC, at 2,008,134 to 2,008,805
_RS09165
LRK54_RS09170: LRK54_RS09170 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 2,008,902 to 2,010,107
_RS09170
LRK54_RS09175: LRK54_RS09175 - dUTP diphosphatase, at 2,010,104 to 2,010,559
_RS09175
LRK54_RS09180: LRK54_RS09180 - phosphomannomutase/phosphoglucomutase, at 2,010,618 to 2,012,930
_RS09180
Group
Condition
LRK54
_RS09160
LRK54
_RS09165
LRK54
_RS09170
LRK54
_RS09175
LRK54
_RS09180
stress
R2A with bismuth(III) chloride 0.03125 mM
N.D.
+0.3
N.D.
-0.8
-3.4
stress
R2A with lithium chloride 15.625 mM
N.D.
-0.1
N.D.
-1.0
-2.6
stress
R2A with lithium chloride 15.625 mM
N.D.
+0.3
N.D.
-1.0
-1.5
stress
R2A with sulfate 250 mM
N.D.
-0.2
N.D.
-1.3
+1.3
stress
R2A with sulfate 250 mM
N.D.
+0.1
N.D.
-1.1
+1.4
r2a_control
R2A control
N.D.
-0.1
N.D.
-1.4
+2.0
r2a_control
R2A control
N.D.
+0.0
N.D.
-1.0
+1.8
r2a_control
R2A control
N.D.
+0.0
N.D.
-1.0
+2.0
r2a_control
R2A control
N.D.
-0.0
N.D.
-0.8
+2.0
stress
R2A with Strontium chloride 3.90625 mM
N.D.
-0.1
N.D.
-0.9
+2.1
stress
R2A with mercury (II) chloride 0.009765625 mM
N.D.
+0.1
N.D.
-1.0
+2.0
r2a_control
R2A control
N.D.
-0.0
N.D.
-0.9
+2.0
r2a_control
R2A control
N.D.
+0.0
N.D.
-0.8
+1.9
r2a_control
R2A control
N.D.
-0.1
N.D.
-0.6
+2.0
r2a_control
R2A control
N.D.
+0.0
N.D.
-0.8
+2.1
r2a_control
R2A control
N.D.
-0.1
N.D.
-0.7
+2.1
stress
R2A with lead(II) chloride 0.625 mM
N.D.
-0.1
N.D.
-0.8
+2.6
stress
R2A with lead(II) chloride 0.625 mM
N.D.
+0.1
N.D.
-0.7
+2.4
r2a_control
R2A control
N.D.
+0.1
N.D.
-0.8
+2.5
r2a_control
R2A control
N.D.
+0.1
N.D.
-0.7
+2.5
stress
R2A with Barium chloride 1.25 mM
N.D.
+0.0
N.D.
-0.8
+2.7
stress
R2A with Barium chloride 1.25 mM
N.D.
-0.0
N.D.
-0.7
+2.8
carbon source
acetate 20 mM
N.D.
-0.2
N.D.
+0.7
+2.0
carbon source
D-Trehalose 20 mM
N.D.
+0.2
N.D.
+0.7
+2.2
carbon source
acetate 20 mM
N.D.
+0.0
N.D.
+0.9
+2.3
carbon source
a-Cyclodextrin 20 mM
N.D.
+0.2
N.D.
+0.6
+2.5
carbon source
Gly-Glu 20 mM
N.D.
+0.3
N.D.
+1.1
+2.0
carbon source
Gly-Glu 20 mM
N.D.
+0.3
N.D.
+1.3
+1.8
carbon source
a-Cyclodextrin 20 mM
N.D.
+0.2
N.D.
+0.4
+2.8
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
N.D.
-0.3
N.D.
+2.1
+3.4
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