Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS09045 and LRK54_RS09050 are separated by 116 nucleotidesLRK54_RS09050 and LRK54_RS09055 overlap by 11 nucleotidesLRK54_RS09055 and LRK54_RS09060 are separated by 50 nucleotidesLRK54_RS09060 and LRK54_RS09065 are separated by 82 nucleotides LRK54_RS09045: LRK54_RS09045 - toll/interleukin-1 receptor domain-containing protein, at 1,973,806 to 1,975,179 _RS09045 LRK54_RS09050: LRK54_RS09050 - restriction endonuclease subunit S, at 1,975,296 to 1,976,594 _RS09050 LRK54_RS09055: LRK54_RS09055 - type I restriction-modification system subunit M, at 1,976,584 to 1,978,194 _RS09055 LRK54_RS09060: LRK54_RS09060 - helix-turn-helix transcriptional regulator, at 1,978,245 to 1,978,469 _RS09060 LRK54_RS09065: LRK54_RS09065 - hypothetical protein, at 1,978,552 to 1,978,908 _RS09065
Group Condition LRK54_RS09045 LRK54_RS09050 LRK54_RS09055 LRK54_RS09060 LRK54_RS09065
stress R2A with bismuth(III) chloride 0.03125 mM -0.8 -0.1 +0.4 -0.2 -0.5
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM -0.1 -0.5 -0.0 -0.3 -0.2
stress R2A with Chloride 250 mM -0.4 -0.4 -0.1 -0.0 -0.1
stress R2A with sulfate 250 mM -0.1 -0.4 -0.1 -0.3 -0.2
carbon source a-Cyclodextrin 20 mM +0.1 -0.4 -0.2 -0.1 -0.3
r2a_control R2A control -0.3 -0.4 +0.0 -0.1 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors -0.1 -0.1 -0.1 -0.4 -0.1
stress R2A with Magnesium sulfate 3.90625 mM -0.3 -0.6 +0.1 -0.0 +0.1
stress R2A with m-arsenite 0.078125 mM -0.4 -0.3 +0.0 -0.0 -0.1
stress R2A with lead(II) chloride 0.625 mM -0.2 -0.3 +0.1 -0.1 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.4 -0.3 -0.1 -0.6 +0.0
stress R2A with Ferric chloride 1.5625 mM -0.3 -0.3 +0.0 +0.1 -0.1
stress R2A with Cesium chloride 3.90625 mM -0.4 -0.4 +0.1 +0.1 +0.0
stress R2A with Chloride 250 mM -0.3 -0.3 +0.0 -0.2 +0.2
stress R2A with chromate 0.0048828125 mM -0.6 +0.3 -0.0 -0.0 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; -0.2 +0.2 +0.0 -0.4 -0.2
phage 3C-T2 +0.1 -0.4 -0.0 +0.1 -0.3
stress R2A with Chloride 250 mM -0.4 -0.4 +0.1 +0.0 +0.1
stress R2A with Calcium chloride 125 mM -0.3 -0.3 +0.1 -0.1 +0.2
stress R2A with sulfate 250 mM -0.4 -0.1 -0.0 -0.1 +0.2
carbon source a-Cyclodextrin 20 mM +0.2 -0.2 -0.1 +0.0 -0.3
stress R2A with Cesium chloride 3.90625 mM -0.4 -0.3 +0.0 +0.0 +0.2
stress R2A with silver chloride 1 mM -0.2 -0.7 +0.1 +0.0 +0.3
phage 1E-T1 +0.1 +0.3 -0.1 -0.2 -0.3
stress R2A with mercury (II) chloride 0.009765625 mM -0.3 -0.2 +0.1 +0.0 +0.2
stress R2A with Nickel (II) chloride 0.3125 mM -0.3 -0.2 +0.1 +0.2 +0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.0 -0.2 +0.2 -0.3 +0.3
phage phage 31.1 +0.3 -0.4 +0.3 -0.0 +0.1
stress R2A with Cobalt chloride 0.15625 mM +0.6 +0.1 +0.1 +0.2 +0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 +0.5 +0.8 +0.2 +0.1 +0.1
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