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Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS08345 and LRK54_RS08350 are separated by 69 nucleotides
LRK54_RS08350 and LRK54_RS08355 are separated by 157 nucleotides
LRK54_RS08355 and LRK54_RS08360 are separated by 10 nucleotides
LRK54_RS08360 and LRK54_RS08365 are separated by 153 nucleotides
LRK54_RS08345: LRK54_RS08345 - YafY family transcriptional regulator, at 1,819,308 to 1,820,012
_RS08345
LRK54_RS08350: LRK54_RS08350 - glutathione S-transferase family protein, at 1,820,082 to 1,820,714
_RS08350
LRK54_RS08355: LRK54_RS08355 - hypothetical protein, at 1,820,872 to 1,821,057
_RS08355
LRK54_RS08360: LRK54_RS08360 - DJ-1/PfpI family protein, at 1,821,068 to 1,821,679
_RS08360
LRK54_RS08365: LRK54_RS08365 - class 1 fructose-bisphosphatase, at 1,821,833 to 1,822,864
_RS08365
Group
Condition
LRK54
_RS08345
LRK54
_RS08350
LRK54
_RS08355
LRK54
_RS08360
LRK54
_RS08365
stress
R2A with Aluminum chloride 3.125 mM
-0.5
+0.3
-1.0
-0.7
-0.1
stress
R2A with arsenate 15.625 mM
+0.1
+0.1
-0.1
+0.0
-1.8
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.6
+0.2
-0.4
-0.2
-0.7
stress
R2A with Manganese (II) chloride tetrahydrate 6.25 mM
-0.6
+0.2
-0.3
-0.3
-0.6
carbon source
casaminos 2 mg/mL
-0.1
-0.1
+0.0
+0.2
-1.5
stress
R2A with arsenate 15.625 mM
+0.1
+0.2
+0.1
-0.1
-1.7
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.1
-0.5
-0.1
+0.4
-1.1
carbon source
a-Cyclodextrin 20 mM
-0.1
-0.0
-0.3
-0.3
-0.3
biofilm assay; planktonic sample
Planktonic; Day2; SGW; pH7
-0.1
-0.3
-0.5
-0.2
+0.1
carbon source
casaminos 2 mg/mL
+0.3
-0.0
+0.1
+0.0
-1.3
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.9
+0.1
-0.3
+0.1
+0.2
stress
R2A with Aluminum chloride 3.125 mM
-0.3
+0.1
-0.6
-0.4
+0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
+1.0
+0.2
+0.1
-0.5
-1.2
phage
1E-T1
-0.7
-0.1
+0.1
+0.3
-0.0
stress
R2A with arsenate 31.25 mM
+0.2
+0.4
+0.2
-0.3
-0.6
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.4
-0.2
+0.3
+0.2
-0.8
stress
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM
-0.2
+0.5
-0.8
-0.2
+0.6
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.7
-0.6
+0.0
+0.9
-1.1
stress
R2A with Magnesium sulfate 3.90625 mM
+0.4
+0.1
+0.1
-0.2
-0.4
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.4
-0.3
+0.2
+0.5
-0.6
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
-0.4
-0.0
-0.2
+0.6
+0.0
stress
R2A with Chloride 250 mM
-0.4
+0.3
+0.1
-0.2
+0.2
stress
R2A with Selective_ion_mix_1 1 X
+0.4
+0.0
-0.4
-0.2
+0.3
stress
R2A with silver chloride 1 mM
-0.0
+0.5
-0.1
-0.4
+0.3
stress
R2A with Nickel (II) chloride 0.625 mM
+0.5
-0.0
+0.4
+0.0
-0.5
stress
R2A with Calcium chloride 250 mM
+0.3
+0.3
-0.2
-0.0
+0.4
stress
R2A with Nickel (II) chloride 0.625 mM
+0.6
+0.1
+0.5
+0.2
-0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.5
+0.3
-0.2
-0.1
+1.7
stress
R2A with chromate 0.0048828125 mM
+1.6
+0.0
+0.5
+0.1
+0.1
stress
R2A with chromate 0.0048828125 mM
+1.4
+0.4
+0.3
+0.2
-0.0
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