Fitness for 5 genes in Rhodanobacter denitrificans FW104-10B01

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500 ntLRK54_RS08325 and LRK54_RS08330 overlap by 4 nucleotidesLRK54_RS08330 and LRK54_RS08335 are separated by 140 nucleotidesLRK54_RS08335 and LRK54_RS08340 are separated by 78 nucleotidesLRK54_RS08340 and LRK54_RS08345 are separated by 123 nucleotides LRK54_RS08325: LRK54_RS08325 - GDSL-type esterase/lipase family protein, at 1,815,353 to 1,816,030 _RS08325 LRK54_RS08330: LRK54_RS08330 - RES family NAD+ phosphorylase, at 1,816,027 to 1,816,749 _RS08330 LRK54_RS08335: LRK54_RS08335 - MbcA/ParS/Xre antitoxin family protein, at 1,816,890 to 1,817,300 _RS08335 LRK54_RS08340: LRK54_RS08340 - DUF885 family protein, at 1,817,379 to 1,819,184 _RS08340 LRK54_RS08345: LRK54_RS08345 - YafY family transcriptional regulator, at 1,819,308 to 1,820,012 _RS08345
Group Condition LRK54_RS08325 LRK54_RS08330 LRK54_RS08335 LRK54_RS08340 LRK54_RS08345
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM +0.0 -1.1 -2.1 -0.1 +0.0
stress R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.1 +0.2 -2.4 -0.2 +0.1
biofilm assay; biofilm sample biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.0 -0.0 -1.9 -0.1 -0.2
biofilm assay; planktonic sample Planktonic; Day4; SGW; pH7 -0.0 +0.3 -1.6 +0.0 -0.9
stress R2A with selenate 31.25 mM -0.1 -0.2 -1.5 -0.2 +0.1
phage 1B-T1 +0.0 -0.0 -1.5 -0.2 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 -0.5 -0.8 -0.1 -0.5
phage 3B-T1 -0.0 -0.3 -1.3 -0.1 -0.1
anaerobic Anaerobic, acetate donor; nitrate and iron electron acceptors +0.0 -0.3 -1.2 -0.0 -0.3
no phage control No phage control -0.0 -0.0 -1.4 -0.1 -0.3
biofilm assay; biofilm sample biofilm; Day2; NLDM; +0.0 -0.0 -1.5 -0.0 -0.2
stress R2A with beryllium sulfate tetrahydrate 1.953125 mM -0.1 -0.8 -0.6 -0.1 -0.1
phage 4E-T2 +0.1 +0.1 -1.5 +0.0 -0.2
biofilm assay; biofilm sample biofilm; Day2; NLDM; Aluminum chloride 1mM +0.3 -0.2 -1.3 +0.1 -0.3
stress R2A with bismuth(III) chloride 0.03125 mM -0.2 +0.1 -1.8 -0.3 +1.0
stress R2A with Manganese (II) chloride tetrahydrate 1.25 mM +0.2 +0.0 -1.0 -0.2 -0.2
stress R2A with nitrite 25 mM +0.1 +0.2 -1.2 -0.3 -0.0
stress R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM +0.1 -0.0 -1.4 -0.3 +0.4
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.2 -0.3 -0.9 -0.0 +0.3
stress R2A with m-arsenite 0.078125 mM +0.2 +0.3 -0.9 -0.3 -0.2
stress R2A with Nickel (II) chloride 0.625 mM +0.0 -0.1 -1.2 -0.2 +0.5
stress R2A with Nickel (II) chloride 0.3125 mM -0.0 +0.6 -0.9 -0.1 -0.5
stress R2A with Gallium(III)chloride 0.78125 mM +0.1 +0.1 -1.2 -0.1 +0.4
stress R2A with sodium bromide 250 mM +0.2 +0.1 -1.0 -0.3 +0.3
carbon source D-Glucose (C); 30C +0.1 +0.2 -1.1 +0.1 +0.3
stress R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM +0.0 -0.1 -0.8 -0.1 +0.7
stress R2A with chromate 0.0048828125 mM +0.1 -0.1 +0.1 +0.0 +1.4
carbon source a-Cyclodextrin 20 mM -0.1 +0.2 +0.3 +1.4 -0.2
stress R2A with chromate 0.0048828125 mM -0.0 +0.1 -0.1 +0.1 +1.6
carbon source a-Cyclodextrin 20 mM -0.0 +0.3 +0.6 +1.3 -0.1
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