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Fitness for 5 genes in
Rhodanobacter denitrificans FW104-10B01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
LRK54_RS08325 and LRK54_RS08330 overlap by 4 nucleotides
LRK54_RS08330 and LRK54_RS08335 are separated by 140 nucleotides
LRK54_RS08335 and LRK54_RS08340 are separated by 78 nucleotides
LRK54_RS08340 and LRK54_RS08345 are separated by 123 nucleotides
LRK54_RS08325: LRK54_RS08325 - GDSL-type esterase/lipase family protein, at 1,815,353 to 1,816,030
_RS08325
LRK54_RS08330: LRK54_RS08330 - RES family NAD+ phosphorylase, at 1,816,027 to 1,816,749
_RS08330
LRK54_RS08335: LRK54_RS08335 - MbcA/ParS/Xre antitoxin family protein, at 1,816,890 to 1,817,300
_RS08335
LRK54_RS08340: LRK54_RS08340 - DUF885 family protein, at 1,817,379 to 1,819,184
_RS08340
LRK54_RS08345: LRK54_RS08345 - YafY family transcriptional regulator, at 1,819,308 to 1,820,012
_RS08345
Group
Condition
LRK54
_RS08325
LRK54
_RS08330
LRK54
_RS08335
LRK54
_RS08340
LRK54
_RS08345
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
+0.0
-1.1
-2.1
-0.1
+0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.2
-2.4
-0.2
+0.1
biofilm assay; biofilm sample
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
-0.0
-0.0
-1.9
-0.1
-0.2
biofilm assay; planktonic sample
Planktonic; Day4; SGW; pH7
-0.0
+0.3
-1.6
+0.0
-0.9
stress
R2A with selenate 31.25 mM
-0.1
-0.2
-1.5
-0.2
+0.1
phage
1B-T1
+0.0
-0.0
-1.5
-0.2
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.1
-0.5
-0.8
-0.1
-0.5
phage
3B-T1
-0.0
-0.3
-1.3
-0.1
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron electron acceptors
+0.0
-0.3
-1.2
-0.0
-0.3
no phage control
No phage control
-0.0
-0.0
-1.4
-0.1
-0.3
biofilm assay; biofilm sample
biofilm; Day2; NLDM;
+0.0
-0.0
-1.5
-0.0
-0.2
stress
R2A with beryllium sulfate tetrahydrate 1.953125 mM
-0.1
-0.8
-0.6
-0.1
-0.1
phage
4E-T2
+0.1
+0.1
-1.5
+0.0
-0.2
biofilm assay; biofilm sample
biofilm; Day2; NLDM; Aluminum chloride 1mM
+0.3
-0.2
-1.3
+0.1
-0.3
stress
R2A with bismuth(III) chloride 0.03125 mM
-0.2
+0.1
-1.8
-0.3
+1.0
stress
R2A with Manganese (II) chloride tetrahydrate 1.25 mM
+0.2
+0.0
-1.0
-0.2
-0.2
stress
R2A with nitrite 25 mM
+0.1
+0.2
-1.2
-0.3
-0.0
stress
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
+0.1
-0.0
-1.4
-0.3
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.3
-0.9
-0.0
+0.3
stress
R2A with m-arsenite 0.078125 mM
+0.2
+0.3
-0.9
-0.3
-0.2
stress
R2A with Nickel (II) chloride 0.625 mM
+0.0
-0.1
-1.2
-0.2
+0.5
stress
R2A with Nickel (II) chloride 0.3125 mM
-0.0
+0.6
-0.9
-0.1
-0.5
stress
R2A with Gallium(III)chloride 0.78125 mM
+0.1
+0.1
-1.2
-0.1
+0.4
stress
R2A with sodium bromide 250 mM
+0.2
+0.1
-1.0
-0.3
+0.3
carbon source
D-Glucose (C); 30C
+0.1
+0.2
-1.1
+0.1
+0.3
stress
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
+0.0
-0.1
-0.8
-0.1
+0.7
stress
R2A with chromate 0.0048828125 mM
+0.1
-0.1
+0.1
+0.0
+1.4
carbon source
a-Cyclodextrin 20 mM
-0.1
+0.2
+0.3
+1.4
-0.2
stress
R2A with chromate 0.0048828125 mM
-0.0
+0.1
-0.1
+0.1
+1.6
carbon source
a-Cyclodextrin 20 mM
-0.0
+0.3
+0.6
+1.3
-0.1
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